Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco1g00350 | ATGGCATCACATTTACTCAATCACTCCGCCAAGGTGAGAAATGCTTCGAAGATGCTGCACCACGAGCGCGCTCTCTTGGCTCGATGGTTTTCCGGCGATGCTCAATCCTCTCTCAATAGGAACCGCGATGTGTGGAAAACTCAGCTCCCCGAGTCTTCAACAAGAAGGGGTGTTTTTGTACCGGCCTCCGGCTTTACTAAGAGAAACATCTCCATGGCTAGCATTAAAAGGGGTTCCATCATGGGGTCAGGGTTCAGTGGAGAGATTTCGCAAAGTTCACAGGTGTTGTCAAGGAGATGCTATGCGTCAGCCTCAGATCTACCCCCCCACCAGGAAATTGGAATGCCATCTCTCTCGCCTACAATGACAGAGGGTAACATTTCAAGATGGTTGAAGAAAGAAGGTGATAAAGTTTCTCCTGGTGAAGTGCTCTGTGAAGTTGAAACTGATAAAGCTACTGTTGAAATGGAAAGTATGGAAGAAGGTTATCTGGCCAAGATAGTCCGAGGAGATGGGGAAAAAGAAATTAAAGTTGGTGAGGTAATCGCCATAACTGTTGAAGATGAGGGGGATATTGCCAAGTTTAAAGATTACAAACCTTCAGCATCTGAACCAAGTGCACCTCCTGCTGAAGAAACATCTGCACCATCCCCACCGAAGAAGGAGGTGGCAGAGGAGCCTGCTCGAGAACCTGAACCAAAGGTTTCCAAACCTAGTGCGCCAACTTCATCTGGAGATCGCATGTTTGCTAGTCCTCTTGCTAGAAAGTTGGCTGAAGAGAAAAACGTACCTCTCTCTAGCATTAAAGGAACAGGACATGAAGGACTCATTGTGAAGGCAGATATTGAAGACTTCTTGGCTTCTGGTCAAGTTTCTGCACCCTCAAAGGCCAAGGGCGCAACAGATGCAGCTTTGGATTATATCGACATTCCTGTATCTCAGATACGGAAGGTCACAGCTTCACGGCTATTATTATCAAAGCAAACTATTCCTCATTACTATTTAACAGTGGATGCATGTGTTGATAAACTGATGAGTTTACGGAGCAAACTCAATTCATTGCAAGAAGCCTCTGGTGGCTCCCGCATATCAATTAATGACCTTGTAATCAAGGCTGCTGCATTGGCTCTCCGCAAAGTTCCTCAATGTAACAGTTCATGGGCAAATGATTATATTCGACAGTATAATAATGTGAATATTAATGTAGCTGTGCAGACTGATAATGGTCTCTTTGTTCCAGTTATCAGGGATGCAGACAAGAAAGGCCTCTCTACAATAGGGGAGGAGGTCAAACAATTGGCAAAGAAAGCCAAGGAAAACAGCTTGAAACCCCGAGATTATGAGGGAGGTACATTTACAGTGTCTAACCTGGGAGGGCCATTTGGTGTCAAACAATTCTGTGCAATCATCAATCCTCCTCAGTCGGGCATTCTTGCAGTTGGATCTGCTGAGAGGAGGGTCATTCCGGGATCAGGTGCGGAAGAATTCAAGTTTGGTTCTTTCATGTCTGTGACCCTAAGCTGTGATCATCGTGTTATAGATGGTGCAATTGGAGCCGAATGGTTAAAAGCATTCAAAGGCTATATTGAAAATCCAGAATCCATGTTGTTGTAA | 1614 | 0.4504 | MASHLLNHSAKVRNASKMLHHERALLARWFSGDAQSSLNRNRDVWKTQLPESSTRRGVFVPASGFTKRNISMASIKRGSIMGSGFSGEISQSSQVLSRRCYASASDLPPHQEIGMPSLSPTMTEGNISRWLKKEGDKVSPGEVLCEVETDKATVEMESMEEGYLAKIVRGDGEKEIKVGEVIAITVEDEGDIAKFKDYKPSASEPSAPPAEETSAPSPPKKEVAEEPAREPEPKVSKPSAPTSSGDRMFASPLARKLAEEKNVPLSSIKGTGHEGLIVKADIEDFLASGQVSAPSKAKGATDAALDYIDIPVSQIRKVTASRLLLSKQTIPHYYLTVDACVDKLMSLRSKLNSLQEASGGSRISINDLVIKAAALALRKVPQCNSSWANDYIRQYNNVNINVAVQTDNGLFVPVIRDADKKGLSTIGEEVKQLAKKAKENSLKPRDYEGGTFTVSNLGGPFGVKQFCAIINPPQSGILAVGSAERRVIPGSGAEEFKFGSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL | 537 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco1g00350 | 537 | ProSitePatterns | 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. | 135 | 164 | IPR003016 | - | |
| Phco1g00350 | 537 | MobiDBLite | consensus disorder prediction | 197 | 247 | - | - | |
| Phco1g00350 | 537 | SUPERFAMILY | CoA-dependent acyltransferases | 307 | 537 | - | - | |
| Phco1g00350 | 537 | SUPERFAMILY | Single hybrid motif | 109 | 204 | IPR011053 | - | |
| Phco1g00350 | 537 | NCBIfam | pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase | 112 | 537 | IPR006257 | GO:0004742|GO:0006090|GO:0045254 | |
| Phco1g00350 | 537 | FunFam | Acetyltransferase component of pyruvate dehydrogenase complex | 106 | 210 | - | - | |
| Phco1g00350 | 537 | MobiDBLite | consensus disorder prediction | 218 | 233 | - | - | |
| Phco1g00350 | 537 | SUPERFAMILY | Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex | 241 | 287 | IPR036625 | GO:0016746 | |
| Phco1g00350 | 537 | Pfam | 2-oxoacid dehydrogenases acyltransferase (catalytic domain) | 307 | 537 | IPR001078 | GO:0016746 | |
| Phco1g00350 | 537 | CDD | lipoyl_domain | 111 | 184 | - | - | |
| Phco1g00350 | 537 | ProSiteProfiles | Biotinyl/lipoyl domain profile. | 110 | 186 | IPR000089 | - | |
| Phco1g00350 | 537 | FunFam | Acetyltransferase component of pyruvate dehydrogenase complex | 292 | 535 | - | - | |
| Phco1g00350 | 537 | Gene3D | - | 237 | 290 | IPR036625 | GO:0016746 | |
| Phco1g00350 | 537 | Gene3D | - | 105 | 211 | - | - | |
| Phco1g00350 | 537 | Pfam | Biotin-requiring enzyme | 112 | 184 | IPR000089 | - | |
| Phco1g00350 | 537 | ProSiteProfiles | Peripheral subunit-binding (PSBD) domain profile. | 249 | 286 | IPR004167 | GO:0016746 | |
| Phco1g00350 | 537 | Coils | Coil | 337 | 357 | - | - | |
| Phco1g00350 | 537 | Gene3D | - | 291 | 535 | IPR023213 | - | |
| Phco1g00350 | 537 | Pfam | e3 binding domain | 249 | 283 | IPR004167 | GO:0016746 | |
| Phco1g00350 | 537 | PANTHER | DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED | 87 | 537 | IPR045257 | GO:0006086|GO:0045254 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco1g00350 | Phco-Chr1 | 2650880 | 2658059 | Dispersed |