Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00348 ATGACAACGTTGTTCGACAGAAGCAAGAAGCTGAAGGGGAGGGTGGTGCTGATGCGGAAGAATGTGTTGGACACAAAAAACATAAGCACTGTGAGAGGAGTTCTTGACACTTCCAGATGCATAGTTGGTTCAACATTCATTGATAGTCTCAGTGCCTTCTCCAATCGATGTGTGTCTCTCTGCTTGATCAGTGCTACCAAGGCTGCTCCAAATGGACGTGGGTTAGTTGGAAAGGAGGCATATTTGGAAGGTGCTGTTACCACGATACCAACCTTGGGAGCGGGGAAATGCGAATTTGATGTTCATTTTGATTGGGACATTGAGCACATGGGAATTCCTGGAGCATTTATAATAAAAAATCATCTGAAAGTTGAGTTCTTTCTCGTGAGTTTGACTCTTGAAGATGTTCCCACTCGTGAAGGACCAATGCACTTTGTTTGCAACTCATGGGTTTATTATCATTTTGTTTACAAAAAGGATCGAATCTTCTTTGCCAATGAGACATATGTGCCAAATGAAACACCAGTACCACTAGTGAGCTACAGAGAAGCAGAATTGCAGATTCTGAGAGGAAATGGAGAAGGGAAACTCAGACAATATCATAGAGTTTACGATTACGATGTTTACAATGATTTGGGCGATCCTGACAAAAACGAAGACTTAGCTCGCCCAGTTCTTGGAGGATCTGATCCCTACCCTCGTAGAGGAAGAACTGGAAGAAAACCCACAAGAAAAGATTGTAACAGTGAGAGACGAAGTGATAAAGTTTATGTGCCAAGAGATGAACATTTTGGTCACTTGAAATCATCTGACCTCCTTTCTTTTGAGATAAAATCTTTATTATCACGAAAAGTGTTGCCTCATCTTAAACATCTATTTGATTCAAATATTTCAAAGGCTGAGTTTGATAGCTTTGATGACGTACATAAACTCTATGAAGGTGGACTTAAGCTCCCTCTGGATACTCTTAGCAAATTTACCACTTTAGGTGAAGATGTCCTCAAGTTTTCTGTACCTCATGTAATTAAAGTGAGTAAATCTGCATGGATGACTGATGAAGAATTTGCTAGGGAGATGCTTGCTGGTGTAAACCCTTGCACGATTCGGCGTCTACAAGCAATTAAATGTCGTAGACTATTTATACTAGACCACCATGACGTATTTATGTCGTTTTTGGGAAGGATAAATAAAACTACATCAAAGGCTTATGCCACTAGGACAATCCTTTTCTTGAAAGATGATGGTACCTTAAAGCCATTGGCCATCGAATTAAGTTTACCACATTCAAGTGGACAAATTGGTGCCCTTAGTAAAGTCGTCTTGCCTGCAAGCAAAGGGGTGGAAAGTACAATTTGGCTATTGGCTAAGGCACATGCTATTGTGAATGATTCGTGCTATCATCAGCTCATAAGTCACTGGTTGAATACTCATGCCGTGATTGAACCCTTTATCATAGCAACAAACAGGAATCTCAGTGTTCTTCACCCTATTCATAAACTTCTATTGCCTCACTATCGTGACACAATGAATATCAATGCACTTGCTCGACAGTCACTAATTAATGCTGGTGGCATTATAGAGCAATCCTTTTTGGGTAGAGAGTATTCTATGGAGATCTCTTCAGCAATATACAAAGATTGGGTGTTCCCTGACCAAGCACTACCAGCTGATCTTATCAAAAGAGGAATGGCTATTGAGGATTCATCCTCTCCCAATGGCCTTCGTCTTGTGATAGAGGACTACCCTTATGCTGTTGATGGACTTGAAATATGGGATGCTATTAAGATATGGGTCCAAGAGTATGTCTCCTTGTATTACCCAACAGATGTGGCAGTTGAACAAGATACTGAACTCCAAGCATGGTGGAAGGAAGTTGTAGAGAAGGGTCATGCTGACTTACAAGACAAGCCTTGGTGGCCTAAAATGAAGACTCTTCAAGAGCTTATTCAATCATGTTCCACCATCATATGGATTGCTTCAGCCTTTCATGCAGTGGTTAATTTTGGACAATATCCTTATGGTGGATTTATCCTCAATCGTCCAACTCTTAGCAGAAGATTGATCCCGGAAAAAGGAACACCAGAATATGATGAGATGGAGGAGAATCCTGAAAAGGCTTATTTAAGAACAATTACACCTAAATATGAGACTATTGTTGACCTTTCAGTGATAGAGATATTATCAAGACATGCTTCTGACGAGGTCTACCTTGGACAGAGGGACAATCCATATTGGACCTCAACTCCAAGGACAATAGAAGCCTTTAAAAGGTTTGGAGAAAAGCTATCAGAGATTGAGAAAAATATTTCAGAAAGGAACCATGATCCAAATCTTAAAAATCGAACTGGACCAGCTCATTTGCCTTACACTGTGCTTCTTCCCACCAGTGAAACGGGGTTGACTTTTAGAGGAATTCCAAACAGTATCTCTATCTAA 2436 0.4052 MTTLFDRSKKLKGRVVLMRKNVLDTKNISTVRGVLDTSRCIVGSTFIDSLSAFSNRCVSLCLISATKAAPNGRGLVGKEAYLEGAVTTIPTLGAGKCEFDVHFDWDIEHMGIPGAFIIKNHLKVEFFLVSLTLEDVPTREGPMHFVCNSWVYYHFVYKKDRIFFANETYVPNETPVPLVSYREAELQILRGNGEGKLRQYHRVYDYDVYNDLGDPDKNEDLARPVLGGSDPYPRRGRTGRKPTRKDCNSERRSDKVYVPRDEHFGHLKSSDLLSFEIKSLLSRKVLPHLKHLFDSNISKAEFDSFDDVHKLYEGGLKLPLDTLSKFTTLGEDVLKFSVPHVIKVSKSAWMTDEEFAREMLAGVNPCTIRRLQAIKCRRLFILDHHDVFMSFLGRINKTTSKAYATRTILFLKDDGTLKPLAIELSLPHSSGQIGALSKVVLPASKGVESTIWLLAKAHAIVNDSCYHQLISHWLNTHAVIEPFIIATNRNLSVLHPIHKLLLPHYRDTMNINALARQSLINAGGIIEQSFLGREYSMEISSAIYKDWVFPDQALPADLIKRGMAIEDSSSPNGLRLVIEDYPYAVDGLEIWDAIKIWVQEYVSLYYPTDVAVEQDTELQAWWKEVVEKGHADLQDKPWWPKMKTLQELIQSCSTIIWIASAFHAVVNFGQYPYGGFILNRPTLSRRLIPEKGTPEYDEMEENPEKAYLRTITPKYETIVDLSVIEILSRHASDEVYLGQRDNPYWTSTPRTIEAFKRFGEKLSEIEKNISERNHDPNLKNRTGPAHLPYTVLLPTSETGLTFRGIPNSISI 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00348 811 PANTHER LIPOXYGENASE 9 811 IPR000907 GO:0016702|GO:0034440|GO:0046872
Phco1g00348 811 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 168 811 IPR013819 GO:0016702|GO:0046872
Phco1g00348 811 FunFam Lipoxygenase 446 810 - -
Phco1g00348 811 Gene3D PLAT/LH2 domain 1 169 - -
Phco1g00348 811 MobiDBLite consensus disorder prediction 215 252 - -
Phco1g00348 811 Pfam Lipoxygenase 178 372 IPR013819 GO:0016702|GO:0046872
Phco1g00348 811 Pfam Lipoxygenase 372 794 IPR013819 GO:0016702|GO:0046872
Phco1g00348 811 PRINTS Lipoxygenase signature 449 466 IPR013819 GO:0016702|GO:0046872
Phco1g00348 811 PRINTS Lipoxygenase signature 467 484 IPR013819 GO:0016702|GO:0046872
Phco1g00348 811 PRINTS Lipoxygenase signature 487 507 IPR013819 GO:0016702|GO:0046872
Phco1g00348 811 ProSitePatterns Lipoxygenases iron-binding region signature 1. 467 481 IPR020833 GO:0016702|GO:0046872
Phco1g00348 811 Gene3D - 445 810 - -
Phco1g00348 811 SMART LH2_4 9 166 IPR001024 GO:0005515
Phco1g00348 811 Gene3D - 170 267 - -
Phco1g00348 811 ProSiteProfiles PLAT domain profile. 34 165 IPR001024 GO:0005515
Phco1g00348 811 Pfam PLAT/LH2 domain 73 164 IPR001024 GO:0005515
Phco1g00348 811 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 9 169 IPR036392 GO:0005515
Phco1g00348 811 Gene3D - 375 444 - -
Phco1g00348 811 Gene3D - 348 374 - -
Phco1g00348 811 PRINTS Plant lipoxygenase signature 299 320 IPR001246 GO:0016491
Phco1g00348 811 PRINTS Plant lipoxygenase signature 724 738 IPR001246 GO:0016491
Phco1g00348 811 PRINTS Plant lipoxygenase signature 161 182 IPR001246 GO:0016491
Phco1g00348 811 PRINTS Plant lipoxygenase signature 135 153 IPR001246 GO:0016491
Phco1g00348 811 PRINTS Plant lipoxygenase signature 200 216 IPR001246 GO:0016491
Phco1g00348 811 PRINTS Plant lipoxygenase signature 231 250 IPR001246 GO:0016491
Phco1g00348 811 MobiDBLite consensus disorder prediction 234 252 - -
Phco1g00348 811 SUPERFAMILY Lipoxigenase 171 811 IPR036226 -
Phco1g00348 811 ProSitePatterns Lipoxygenases iron-binding region signature 2. 494 504 IPR020834 GO:0016702|GO:0046872
Phco1g00348 811 Gene3D - 268 347 IPR027433 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00348 Phco-Chr1 2635061 2639596 Dispersed/Tandem