Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00347 ATGTTTGGGATCTTAAACAGGGGTCACAAGATAAAGGGGACGGTGGTGGTGATGACCAAGAATGTGTTTGACTTCAATGAATTTGTGTCAACCACTAGGGGTGGAATAGTTGGTGCTGCAGGAGGCCTCTTCGGTGCTGCCACTGACATAGTTGGAGGCATAGTTGACGGTGCCACTGCCATCTTCAGCCGTAACATTGCCATTCAGTTGATCAGTGCAACCAAAACTGATGGGCTTGGAAATGGAAAGGTTGGAAAACAAACCTTTTTGGAGAAACATCTTCCTTCGTTACCAAACTTGGGAGATAGACAAGATGCATTCAATGTTTATTTTGAATGGGATGAGAATTTTGGAATTCCAGAAGCATTTTACATAAAAAACTTTATGCAATCTGAGTTTTTTCTTGTGAGTCTCACTCTTGAAGACATTCCAAATCATGGAACCATTCACTTTGTTTGCAATTCATGGGTTTACAACGCTAAATGTTACAAAAGAGATCGCATTTTCTTTGTTAATAAGACATATCTTCCAAATGAAACTCCAACTTCACTGGTAAAGTACAGAAAAGAAGAGCTGGAAAATCTTAGAGGAGATGGAACAGGGGAGCGCAAGGAATATGACAGGATCTATGACTACGCTGTTTATAATGATTTGGGCAATCCAGACAAGAACAAGAATTTAGCTCGTACTACTCTTGGAGGGTCTAGTGACTTTCCCTACCCTCGCAGGGGAAGAACTGGTAGAAAATCAACAAGGAAAGACCCTAAGTGTGAGATACCAACCAGTGACACCTACATTCCAAGAGATGAAAACTTTGGTCATTTGAAGTCAGGAGACTTTCTTACCTATGCAATAAAGTCCTTAACTCAAAATGTGTTACCTACATTTCAAAGTGCATTCGGTTTCAACAATGAGTTTGATACCTTTGAAGACGTGCGTGGACTCTTTGAAGGTGGACTTTATCTCCCTACAGACGTAATCAGCAAAATTAGCCCCATACCAGTGCTTAAGGAAATCCTCCGCACTGATGGTGAGCAAGTCCTCAAGTTTCCACCACCTCAAGTCATCAGAGTTACTAAGTCTGCATGGATGACTGATGAAGAATTTGGGAGAGAGATGCTGGCTGGTGTAAATCCTTGCCTAGTTCAACGCCTTCAAGAGTTCCCCCCAAAAAGCAAGCTAGACGTTACGGTGTATGGTGATCAAACTAGTACAATGACCAAAGAACACTTGGAGATCAACCTTGGTGGACTCACTGTGGAACAGGCACTGCATGGTAACAGATTGTTCATATTAGATCATCATGATGCATTCATACCATATTTGGAAAGGATCAATGATCTTCCCACTGCAAAGTGTTATGCCACAAGAACTATCCTTTTCTTGAAAGATGACAACACATTGAAGCCACTAGCCATTGAATTAAGTTTGCCAAATCCTGGGGGAAATGGTGTCAATAGTAGAGTAATCTTGCCTGCAGATCGAGGTGCTGAAAGCACAATTTGGCTACTTGCAAAGGCTTATGTTGTTGTAAATGACTCCTGCTACCATCAACTCATCAGCCATTGGTTGAATACTCATGCCGTAATGGAACCGTTTGTGATAGCAACAAACAGACATTTGAGTGTGCTCCACCCTATTTATAAACTTTTGTTGCCTCATTATCGTGACACTATGAATATCAATGCACTTGCACGACAGTCGCTCATCAATGCAGGTGGTGTCATTGAGCGATCATTTTTGCCTGGCGAATTCGCTGTGGAGATTTCCTCAGCAGTTTACAAGAGTTGGGTTTTCACTGATCAAGCCCTTCCAGCAGATCTTATCAAGAGAGGAATGGCAGTTGAGGATCCATCCTCTCCATATGGCCTTCGCCTTGTGGTAGAGGACTACCCTTATGCTGTTGATGGACTAGAAATATGGGATACTATCCAGACTTGGGTTAAAGACTATGTCTCCTTGTACTATCCCACAAATGATGCAGTTAAGAAAGACACTGAACTCCAAGCTTGGTGGAAGGAAGCTGTTGAGAAGGGTCATGGTGACTTGAAAGATAAGCCATGGTGGCCAAAGTTGAACACTCCTCAAGATCTGATTCACACTTGCTCCATTATTATATGGATTGCTTCAGCTCTTCATGCAGCTGTGAATTTTGGACAATATCCTTACGGTGGTTTCATCCTAAATCGTCCAACTATAACCAGAAGATTGCTGCCTGAACCAGGAACCAAAGAATATCATGAGCTAACCAGCAATTATCAAAAGGCTTATTTGAGAACAATTACAGGGAAGGTAGAGGCCATTGTGGACCTTTCAGTGATAGAGATATTGTCAAGACATGCTTCTGATGAGGTTTATCTTGGACAAAGGGACAATCCAAATTGGACTAATGACATAAAAGCACTTCAAGCCTTTAAAAGGTTTGGAAAAAAGCTGAAGGAAATTGAAGATAAAATCATGAAGAGGAACAAAGATTCAAGTCTTAGAAACCGTAATGGACCAGTTCAGATGCCCTACACTGTGCTTCTTCCTACCTGTGAAGATGAAGGCCTCACTTTTAGAGGAATTCCCAACAGCATCTCAATCTAA 2589 0.4175 MFGILNRGHKIKGTVVVMTKNVFDFNEFVSTTRGGIVGAAGGLFGAATDIVGGIVDGATAIFSRNIAIQLISATKTDGLGNGKVGKQTFLEKHLPSLPNLGDRQDAFNVYFEWDENFGIPEAFYIKNFMQSEFFLVSLTLEDIPNHGTIHFVCNSWVYNAKCYKRDRIFFVNKTYLPNETPTSLVKYRKEELENLRGDGTGERKEYDRIYDYAVYNDLGNPDKNKNLARTTLGGSSDFPYPRRGRTGRKSTRKDPKCEIPTSDTYIPRDENFGHLKSGDFLTYAIKSLTQNVLPTFQSAFGFNNEFDTFEDVRGLFEGGLYLPTDVISKISPIPVLKEILRTDGEQVLKFPPPQVIRVTKSAWMTDEEFGREMLAGVNPCLVQRLQEFPPKSKLDVTVYGDQTSTMTKEHLEINLGGLTVEQALHGNRLFILDHHDAFIPYLERINDLPTAKCYATRTILFLKDDNTLKPLAIELSLPNPGGNGVNSRVILPADRGAESTIWLLAKAYVVVNDSCYHQLISHWLNTHAVMEPFVIATNRHLSVLHPIYKLLLPHYRDTMNINALARQSLINAGGVIERSFLPGEFAVEISSAVYKSWVFTDQALPADLIKRGMAVEDPSSPYGLRLVVEDYPYAVDGLEIWDTIQTWVKDYVSLYYPTNDAVKKDTELQAWWKEAVEKGHGDLKDKPWWPKLNTPQDLIHTCSIIIWIASALHAAVNFGQYPYGGFILNRPTITRRLLPEPGTKEYHELTSNYQKAYLRTITGKVEAIVDLSVIEILSRHASDEVYLGQRDNPNWTNDIKALQAFKRFGKKLKEIEDKIMKRNKDSSLRNRNGPVQMPYTVLLPTCEDEGLTFRGIPNSISI 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00347 862 Pfam Lipoxygenase 184 844 IPR013819 GO:0016702|GO:0046872
Phco1g00347 862 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 8 175 IPR036392 GO:0005515
Phco1g00347 862 FunFam Lipoxygenase 496 861 - -
Phco1g00347 862 Gene3D - 362 494 - -
Phco1g00347 862 Pfam PLAT/LH2 domain 81 170 IPR001024 GO:0005515
Phco1g00347 862 Gene3D - 276 361 IPR027433 -
Phco1g00347 862 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 174 862 IPR013819 GO:0016702|GO:0046872
Phco1g00347 862 PRINTS Plant lipoxygenase signature 303 324 IPR001246 GO:0016491
Phco1g00347 862 PRINTS Plant lipoxygenase signature 206 222 IPR001246 GO:0016491
Phco1g00347 862 PRINTS Plant lipoxygenase signature 348 364 IPR001246 GO:0016491
Phco1g00347 862 PRINTS Plant lipoxygenase signature 454 478 IPR001246 GO:0016491
Phco1g00347 862 PRINTS Plant lipoxygenase signature 167 188 IPR001246 GO:0016491
Phco1g00347 862 PRINTS Plant lipoxygenase signature 774 788 IPR001246 GO:0016491
Phco1g00347 862 PRINTS Plant lipoxygenase signature 141 159 IPR001246 GO:0016491
Phco1g00347 862 PRINTS Plant lipoxygenase signature 387 406 IPR001246 GO:0016491
Phco1g00347 862 PRINTS Plant lipoxygenase signature 239 258 IPR001246 GO:0016491
Phco1g00347 862 PANTHER LIPOXYGENASE 9 862 IPR000907 GO:0016702|GO:0034440|GO:0046872
Phco1g00347 862 PRINTS Lipoxygenase signature 499 516 IPR013819 GO:0016702|GO:0046872
Phco1g00347 862 PRINTS Lipoxygenase signature 517 534 IPR013819 GO:0016702|GO:0046872
Phco1g00347 862 PRINTS Lipoxygenase signature 537 557 IPR013819 GO:0016702|GO:0046872
Phco1g00347 862 ProSiteProfiles PLAT domain profile. 44 171 IPR001024 GO:0005515
Phco1g00347 862 FunFam Lipoxygenase 176 275 - -
Phco1g00347 862 SUPERFAMILY Lipoxigenase 176 862 IPR036226 -
Phco1g00347 862 CDD PLAT_LH2 9 172 IPR042057 -
Phco1g00347 862 Gene3D - 495 861 - -
Phco1g00347 862 ProSitePatterns Lipoxygenases iron-binding region signature 2. 544 554 IPR020834 GO:0016702|GO:0046872
Phco1g00347 862 FunFam Lipoxygenase 362 494 - -
Phco1g00347 862 Gene3D - 176 275 - -
Phco1g00347 862 MobiDBLite consensus disorder prediction 225 262 - -
Phco1g00347 862 Gene3D PLAT/LH2 domain 1 175 - -
Phco1g00347 862 ProSitePatterns Lipoxygenases iron-binding region signature 1. 517 531 IPR020833 GO:0016702|GO:0046872
Phco1g00347 862 SMART LH2_4 9 172 IPR001024 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00347 Phco-Chr1 2618557 2622982 Dispersed/Proximal