Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00343 ATGTTTTGGCGCGGGACGTCAACGGGTCACCAAGCGAAGGGGAGAGTGGTTTTGATGAGCAAGAATGTGTTGGACTTCAAGGAAAGAGTGTCTGATAGTGCCACTGCCATCTTCAGCCCTAAGTTTTCCATAAAGCTTATCAGTTCCGAGGAGACTGATGGGCAACGTGGGAAGGTTGGAAAGGAAACCTTTCCGGAAAAAGATCAACCTGGTTCTTCTTCGTTACCAACCTTGGGAGAGGGACAAGCTGCATTCAATATTTATTTTAAATGGGATGAAGGTTTTGGAATTCCAGGAGCATTCTACATCAAAAACTTACAGCAAGCTGAGTTTTTCCTTTTGAGTCTCACTCTTGCAGACATTCCAAATCGTGAAACCATTCACTTTGTTTGCAACTCCTGGGTTTACAATGCAAAGAAGTACAAAAAGGATCGTATTTTCTTTTCAAACAAGACGTATCTTCCTCATGAAACTCCAACTCCACTAGTTAAGTACAGAGAAGAAGAATTGAAAAGTCTAAGAGGAGATGGAAAAGGAAAGCGCGAAGAACATGATAGGATTTATGATTATGATGTGTATAATGATTTGGGCGACCCAGACAAGAATGTAGATCTAGCTCGTGATGTTCTTGGAGACCCTAAGAGTGAGACACCAACAACCAACGACACTTACATTCCAAGAGATGAGAATTTTGGTCACTTGAAGTCATCAGACTTTCTTACAAATGGAATAAAGTCCTTGGCTCAAAATGTCTTACCTCAATTTCAATCTGCATTTGGTTTAAATGCCGAGTTTGACAAGTTTGATGACGTTCGTGGACTCTTTGAAGGTGGACTTCAACTTCCTACAGACGTAATCAGCAAAATTAGCCCCATACCAGTGATAAAGGAAATCTTCCGCACTGATGGTGAACAAGTCCTCAAGTTTCCACAACCTCATGTCATCCAAGTTAGTGAGTCTGCATGGATGACTGATGAAGAATTTGGAAGAGAGATGCTTGCTGGTGTTAATCCTTGCCTAATTCAACGCCTTCAAGAGTTCCCTCCAAAGAGCAAGCTAGATGATTCTGTGTATGGTGATCAAACTAGCAAAATTACCAAAAAAAATTTGGAGACTAACCTTCGTGGACTCACCGTGGAAAAGGCATTGAAAGATAACCGATTGTTCATATTAGATTACCATGATGCATTCTTACCATATCTGAGGGATATCAATAACCCACCCACCAACCCACCCACCAACCTACCCACCGCAAAGGGAGATAAGTATGGTGCTGTTAGTAGAGTTATCTTGCCTGCAGACCAAGGCGCTGAAAGCACAATTTGGCTATTGGCCAAGGCTTATGTTATTGTAAATGACTCCTGTTATCATCAACTTGTGAGCCACTGGTTAAATACTCATGCCATAATTGAGCCATTTGTCATAGCAACAAATAGGTGTCTCAGTGTGCTTCACCCTATTTATAAACTTTTATCACCTCACTATCGTGGCACCATGAATATTAATGGAGTTGCACGAAAATCACTCATCAACGCAGGTGGCCTTATTGAGCAATCTTTTTTGCCTGGAAAATACGCTTTGAAAATGTCTTCAGAAGCTTACAAGAATTGGGTTTTCAGGGATCAAGCCCTTCCTAAAGATCTTGTCAAGAGAGGAATGGCATCTATGGATTCAGCAAATCGCCTTCAACTTGTGATAAAGGACTACCCTTATGCTGTTGATGGACTAGAGATATGGAGTGCTATTCAGAAATGGGTTAGATCTTATGTCTCCTTGTACTATAAAGAAGGCGGTGGAACAATTAAGGAAGATTCTGAACTCAAGGCTTGGTGGGAGGAAGTTGTTGAGAAGGGTCACGGTGACTTGAAAGGTGAGTCACGGTTGCCTGAGTTGAAAACTGATAAAGATCTGATTGAGATTTGCAGCATTATCATATGGATTGCTTCAGCTCAACATGCAGCTGTTAATTTTGGACAATACCCTTATGGAGGTTACATCCTAAACCGTCCAACTCTAACCAGAAGATTGATCCCAGAGTCAGGAACCGAAGAATTTGAAGAGCTGAGCGACAATCAAGAAAAGGCTTATCTGGAAACAATTACAAAAAAACATGAGGCCCTTGTGAACCTTTCAGTGATAGCGATATTGTCAAGACATGCTTCTGATGAGGTCTATCTTGGACAGAGGGACAATTCAAATTGGACTGATGAAACAAAGGCTCTTCAAGCCTTTACAGATTTTGGAAACACACTGAAGGAAATTAAGAATAGAATCTTAGGAAGGAACACAAATTCAAGTCTTAGAAACCGTGTTGGGCCAGTTAAGATGCCCTACACTCTGCTTCTTCCTACCAGTCAGGAAGGTCTCACTTTCAGCGGAATCCCCAACAGCATCTCTATTTAA 2403 0.4145 MFWRGTSTGHQAKGRVVLMSKNVLDFKERVSDSATAIFSPKFSIKLISSEETDGQRGKVGKETFPEKDQPGSSSLPTLGEGQAAFNIYFKWDEGFGIPGAFYIKNLQQAEFFLLSLTLADIPNRETIHFVCNSWVYNAKKYKKDRIFFSNKTYLPHETPTPLVKYREEELKSLRGDGKGKREEHDRIYDYDVYNDLGDPDKNVDLARDVLGDPKSETPTTNDTYIPRDENFGHLKSSDFLTNGIKSLAQNVLPQFQSAFGLNAEFDKFDDVRGLFEGGLQLPTDVISKISPIPVIKEIFRTDGEQVLKFPQPHVIQVSESAWMTDEEFGREMLAGVNPCLIQRLQEFPPKSKLDDSVYGDQTSKITKKNLETNLRGLTVEKALKDNRLFILDYHDAFLPYLRDINNPPTNPPTNLPTAKGDKYGAVSRVILPADQGAESTIWLLAKAYVIVNDSCYHQLVSHWLNTHAIIEPFVIATNRCLSVLHPIYKLLSPHYRGTMNINGVARKSLINAGGLIEQSFLPGKYALKMSSEAYKNWVFRDQALPKDLVKRGMASMDSANRLQLVIKDYPYAVDGLEIWSAIQKWVRSYVSLYYKEGGGTIKEDSELKAWWEEVVEKGHGDLKGESRLPELKTDKDLIEICSIIIWIASAQHAAVNFGQYPYGGYILNRPTLTRRLIPESGTEEFEELSDNQEKAYLETITKKHEALVNLSVIAILSRHASDEVYLGQRDNSNWTDETKALQAFTDFGNTLKEIKNRILGRNTNSSLRNRVGPVKMPYTLLLPTSQEGLTFSGIPNSISI 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00343 800 Gene3D PLAT/LH2 domain 5 153 - -
Phco1g00343 800 Gene3D - 435 799 - -
Phco1g00343 800 PRINTS Lipoxygenase signature 457 474 IPR013819 GO:0016702|GO:0046872
Phco1g00343 800 PRINTS Lipoxygenase signature 477 497 IPR013819 GO:0016702|GO:0046872
Phco1g00343 800 PRINTS Lipoxygenase signature 439 456 IPR013819 GO:0016702|GO:0046872
Phco1g00343 800 ProSiteProfiles PLAT domain profile. 12 149 IPR001024 GO:0005515
Phco1g00343 800 ProSitePatterns Lipoxygenases iron-binding region signature 1. 457 471 IPR020833 GO:0016702|GO:0046872
Phco1g00343 800 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 152 800 IPR013819 GO:0016702|GO:0046872
Phco1g00343 800 Pfam PLAT/LH2 domain 56 148 IPR001024 GO:0005515
Phco1g00343 800 SUPERFAMILY Lipoxigenase 154 800 IPR036226 -
Phco1g00343 800 Gene3D - 321 431 - -
Phco1g00343 800 PANTHER LIPOXYGENASE 12 800 IPR000907 GO:0016702|GO:0034440|GO:0046872
Phco1g00343 800 Gene3D - 154 219 - -
Phco1g00343 800 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 10 153 IPR036392 GO:0005515
Phco1g00343 800 SMART LH2_4 10 150 IPR001024 GO:0005515
Phco1g00343 800 Gene3D - 235 320 IPR027433 -
Phco1g00343 800 ProSitePatterns Lipoxygenases iron-binding region signature 2. 484 494 IPR020834 GO:0016702|GO:0046872
Phco1g00343 800 PRINTS Plant lipoxygenase signature 713 727 IPR001246 GO:0016491
Phco1g00343 800 PRINTS Plant lipoxygenase signature 307 323 IPR001246 GO:0016491
Phco1g00343 800 PRINTS Plant lipoxygenase signature 184 200 IPR001246 GO:0016491
Phco1g00343 800 PRINTS Plant lipoxygenase signature 346 365 IPR001246 GO:0016491
Phco1g00343 800 PRINTS Plant lipoxygenase signature 145 166 IPR001246 GO:0016491
Phco1g00343 800 PRINTS Plant lipoxygenase signature 119 137 IPR001246 GO:0016491
Phco1g00343 800 MobiDBLite consensus disorder prediction 53 75 - -
Phco1g00343 800 FunFam Lipoxygenase 436 799 - -
Phco1g00343 800 Pfam Lipoxygenase 416 783 IPR013819 GO:0016702|GO:0046872
Phco1g00343 800 Pfam Lipoxygenase 162 406 IPR013819 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00343 Phco-Chr1 2579728 2586094 Proximal