Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00340 ATGAGTTCAATAGTGGTGAAGGGGAAGGTGGTGAAGGGGAAGGTGGTGTTGATTCGGAAGAGTGTGATTGAAAACCTAACCAACGCCAAGGGTCTCATTGGCACTGGCATCAAGCTAATTAACTCTTCTGTTGAATATGATATCACTAAATCTGTGTCTTTCAAGTTGATTAGTCGTACCAACTCACAGACTCCAAACAATGGGGCTGGGAAAGTTGGAAAGGATAGCTATTTGGAGAATAATGTTTCTGTGTTACGAAGCTTGGGGGGCACAGAGGAGGAATTCGATATTTATTTTGAATGGGATGGTAATGATATGGGAATTCCAGGAGCATTCTACGTAACAAACCTAATGAATGATGAGTTCTTCCTTGTCAGTGTCACTCTTGAATATCCAACAACTGAACACGACCAAAACAATATTCACCACCACGACCAAAACAAAATTCACCACGACCACAACAATATTCACTTTGTGTGTAACTCATGGGTTCACAACCATAAGTGTTACAAAACGGATCGCATTTTCTTTGCCAATATTCCATATCTTCCTGGTAAAGCGACACCAGTGGCATTGCAAACGTACAGAGAAGAAGAGTTGAAGAATTTAAGGGGAGATGGAACTGGAAAGCGTGAGAAATGGGATAGGATTTATGACTATGATGTCTATAATGATCTGGGCTTTCTACCCAGCGATGGACAAGAAGATCACCCAGTTCTTGGAGGCCTGAAATATCCCTACCCTCGTAGGGTTAGAACTGGGAGAAAACTCATCCACAATAACAAGAATGGTGGTGAATACGAGGAACCAGACGAGGTTCATTATGTGCCAAGAGATGAAAATTTCAGTAACGTGAAGGCTAAAGAATTCCTTGAATTGGGAACAAAAACTTTAGCTGAAAGAGTTGAACCGTTGCTCCTATCTTTACATTTAAAGACCACACCAAATGAATTTAATGGCTTCGAAGAAGTGCAGAGAATGTATGAAGGTGGCGTTAATCTGCCTATATCTATCACTGCCAACGGTACTCCAAGTGTCCTTAAGTTCCCACCACCTCATGTAATCCAAGAAAGCAAGTTTGCATGGATGACTGATGAAGAATTTGCAAGAGAGATGATTGCCGGTGTAAACCCTATTGTAATTCGTCTTCTTAAAAAGGAGGGGATTGCATCGCCATGCAAGCCACTTTGCAACTGTATTCAACCCGGTAGAGTAACAAACGAAAAGTTGGAGATTAACATGAATGGGGTCAAAGTAGATGAGGCATTGGCTGATGGAAGATTGTTCATATTAGATTACTATGATTCATTCATGCCATATTTGACCAAGATAAACGAGCTTCCTTCTGCAAAGGCTTATGCCACTAGGACATTCTTGTTCTTGAAAGATGATGGGACATTGAAACCACTTGCTATTGAATTAAACAAGCCACATAAATGTGGAGATCGTTATTTGGGTATCGAGAGAATAGTGGTGTTGCCTGCAGACAAAGGTGTTGAAAGTACAATTTGGCAATTGGCCAAAGCTCATGTTATTGTTAATGACACCAACTATCATCAGCTCATAAGCCACTGGTTAAATACTCATGCAGTGATTGAGCCATTTGCCATAGCAACACACAGGAACCTCAGTGTACTTCACCCCATTTATAAACTTCTTCATCCTCACTTCCGTGACACCATAAATATCAATGCACTTGCTAGGAAATCCCTAATTACTGCAGGTGGCATTATAGAGGAAACTTTTTTGCCTGGACCGTATTCTATGGAGATGTCTTCCGCTGTATACAAGAATTGGGTTTTCACTGACCAAGCATTACCAAACGATCTCATCAAAAGAGGAATGGCGGTTAAGGATATCTCTGCCCCTCATGGCCTTAGCCTTGCGATAGAGGACTATCCTTATGCTGTTGATGGACTTGAAATATGGAATGCTCTTAAGATGTGGGTTCGAGAGTACGTCTCTCTGTATTATTCAGAAGGTGATGCAGTTCAACAAGATACTGAATTACAAACATGGTGGAAGGAAGTTGTGGAGAAGGGTCACGGTGACTTAAAAGCTGAACAATGGCCTAAAATGAAGACTTCTCAAGAGCTGGTTGAAACTTGCACTACCATTATATGGATTGCTTCAGCTCTTCATGCTGCTGTTAATTTTGGACAGTATCCTTATGGAGGTTACATTCTGAACCGTCCTACACAAAGCCGAAGATGGATCCCAAAACAAGGAACTCCAGAGTACATTGAGATGACCAACAATCCTCAAGAAACTTTTTTGAAGACAATTACTCCGAAGTACCAGACTGTTATTGATCTTACAGTGATGGAGATACTATCAAGGCATGCATCTGACGAGGTATATCTTGGACAAAGGGACAGCTTGGACTGGACTGCTGATCAAAATGCAAAAGATTTGTTCAAAACATTTACAGAACAGCTGAAACACATTGAGAGCAATATCTCTGAAAGGAACAACAACAAAGAACTTAGAAACCGAACTGGACCAGTGAAATTTCCCTACACTGTGCTTCTTCCTTCGAGTGAACCAGGGATGACTTTTAGAGGAATCCCTAACAGTGTCTCTATCTAA 2589 0.4114 MSSIVVKGKVVKGKVVLIRKSVIENLTNAKGLIGTGIKLINSSVEYDITKSVSFKLISRTNSQTPNNGAGKVGKDSYLENNVSVLRSLGGTEEEFDIYFEWDGNDMGIPGAFYVTNLMNDEFFLVSVTLEYPTTEHDQNNIHHHDQNKIHHDHNNIHFVCNSWVHNHKCYKTDRIFFANIPYLPGKATPVALQTYREEELKNLRGDGTGKREKWDRIYDYDVYNDLGFLPSDGQEDHPVLGGLKYPYPRRVRTGRKLIHNNKNGGEYEEPDEVHYVPRDENFSNVKAKEFLELGTKTLAERVEPLLLSLHLKTTPNEFNGFEEVQRMYEGGVNLPISITANGTPSVLKFPPPHVIQESKFAWMTDEEFAREMIAGVNPIVIRLLKKEGIASPCKPLCNCIQPGRVTNEKLEINMNGVKVDEALADGRLFILDYYDSFMPYLTKINELPSAKAYATRTFLFLKDDGTLKPLAIELNKPHKCGDRYLGIERIVVLPADKGVESTIWQLAKAHVIVNDTNYHQLISHWLNTHAVIEPFAIATHRNLSVLHPIYKLLHPHFRDTININALARKSLITAGGIIEETFLPGPYSMEMSSAVYKNWVFTDQALPNDLIKRGMAVKDISAPHGLSLAIEDYPYAVDGLEIWNALKMWVREYVSLYYSEGDAVQQDTELQTWWKEVVEKGHGDLKAEQWPKMKTSQELVETCTTIIWIASALHAAVNFGQYPYGGYILNRPTQSRRWIPKQGTPEYIEMTNNPQETFLKTITPKYQTVIDLTVMEILSRHASDEVYLGQRDSLDWTADQNAKDLFKTFTEQLKHIESNISERNNNKELRNRTGPVKFPYTVLLPSSEPGMTFRGIPNSVSI 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00340 862 PRINTS Lipoxygenase signature 519 536 IPR013819 GO:0016702|GO:0046872
Phco1g00340 862 PRINTS Lipoxygenase signature 501 518 IPR013819 GO:0016702|GO:0046872
Phco1g00340 862 PRINTS Lipoxygenase signature 539 559 IPR013819 GO:0016702|GO:0046872
Phco1g00340 862 SUPERFAMILY Lipoxigenase 188 862 IPR036226 -
Phco1g00340 862 Pfam PLAT/LH2 domain 59 177 IPR001024 GO:0005515
Phco1g00340 862 Gene3D - 286 359 IPR027433 -
Phco1g00340 862 ProSitePatterns Lipoxygenases iron-binding region signature 1. 519 533 IPR020833 GO:0016702|GO:0046872
Phco1g00340 862 ProSiteProfiles PLAT domain profile. 27 178 IPR001024 GO:0005515
Phco1g00340 862 ProSitePatterns Lipoxygenases iron-binding region signature 2. 546 556 IPR020834 GO:0016702|GO:0046872
Phco1g00340 862 Gene3D PLAT/LH2 domain 1 182 - -
Phco1g00340 862 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 11 182 IPR036392 GO:0005515
Phco1g00340 862 Pfam Lipoxygenase 192 845 IPR013819 GO:0016702|GO:0046872
Phco1g00340 862 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 182 862 IPR013819 GO:0016702|GO:0046872
Phco1g00340 862 Gene3D - 183 285 - -
Phco1g00340 862 PRINTS Plant lipoxygenase signature 315 336 IPR001246 GO:0016491
Phco1g00340 862 PRINTS Plant lipoxygenase signature 453 477 IPR001246 GO:0016491
Phco1g00340 862 PRINTS Plant lipoxygenase signature 246 265 IPR001246 GO:0016491
Phco1g00340 862 PRINTS Plant lipoxygenase signature 174 195 IPR001246 GO:0016491
Phco1g00340 862 PRINTS Plant lipoxygenase signature 214 230 IPR001246 GO:0016491
Phco1g00340 862 PRINTS Plant lipoxygenase signature 775 789 IPR001246 GO:0016491
Phco1g00340 862 PRINTS Plant lipoxygenase signature 148 166 IPR001246 GO:0016491
Phco1g00340 862 FunFam Lipoxygenase 498 861 - -
Phco1g00340 862 SMART LH2_4 9 179 IPR001024 GO:0005515
Phco1g00340 862 PANTHER LIPOXYGENASE 10 862 IPR000907 GO:0016702|GO:0034440|GO:0046872
Phco1g00340 862 Gene3D - 360 496 - -
Phco1g00340 862 Gene3D - 497 861 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00340 Phco-Chr1 2546199 2549637 Dispersed/Tandem