Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00339 ATGAGTTCAATAGTGGAGAAGGGGAAGTTGGTGAAGGGGAAGGTGGTGTTGATTCGGAAGACTCTGATCGAATCCCTAACCAACCCCAAGGCTCTCATTGGCACTGGCTTCAAGCTAATAAACTCTTTAGTCGAAGATATCACTAAATCTGTGTCTTTCAAGTTGATTAGTCGTACCAAGTCACAAGATACAACAAATGTGGCTGGGAAAGTGGGAAAGGATAGCTATTTGGAGAATAAAGCTTCTGTGTTACGAACCTTGGAGGGCATAAAGGAGGAGTTCGATATTTATTTTGAATGGGAAGATATTCATATGGGAATTCCAGGAGCCTTTTACGTAACAAACCGAATGAATGATGAGTTCTTCCTTGTCAGTTTGACTCTTGAATATCCAGCTCCAACAACTGACCACGACCAAAACAATATTCACTTTGAGTGTAACTCGTGGGTTCATAACCAGAAGTTTTACAAAACGGATCGCATTTTCTTTGCCAACATTCCATATCTTCCTGGTAAAGCGACACCAGTGACATTACAAACGTACAGAGAAGAAGAGTTGAAGAATTTAAGGGGAGATGGAACTGGAAAGCGTGAGAAATGGGATAGGATTTATGACTATGATGTCTATAATGATCTGGGCTTTCTACCCAGCGATGGACAAGAAGATCACCCAGTTCTTGGAGGCCTGAAATATCCCTACCCTCGTAGGGTTAGAACTGGGAGAAAACTCATCCACAATAACAAGAATGGTGGTGAATACGAGGAACCAGCCGAGGATAATTATGTGCCAAGAGATGAAAATTTCAGTAACGTGAAGGGTAAAGAATTCCGTGAATTAGGAAAAGAAAGTTTAGGAAGAGTCACACCCTTGCTCCTCTCTTTATATTTAAAGACCACAACAAACGAATTTAATGGCTTCGAAGAAGTGCAGAGAATGTATGAAGGTGGCGTTAATCTGCCTATATCTATCCCTGGCAACTGTACTCCAAGTGTCCTTCAGTTCCCACCACCTAATGTAATCCAAGAAAGCAAGTTTGCATGGATGACTGATGAAGAATTTGCAAGAGAGATGATTGCGGGTGTAAACCCTGTTGTAATTCGCCGTCTTAAAATAGAGGAGCTCGCATCGCCATGCAAGCCACTTTGCAACTGTACTCAACCCAGTACAATAACAAACGAAAAGTTGGAGATCAACATGAATGAAGTCAAAGTAGATGAGAGGTATATGAAGTTAACAGTAATCATTGAAATTAAATTTGTGGAACAGGCATTGGCTCAAGGAAGATTATTCATATTAGATTACTATGACGCATTCATGTCGTATTTGACCAAGATAAACCAGCTTCATTCTGCAAAGGCTTATGCCACCAGGACATTCTTGTACTTGAAAGATGATGGGACATTGAAACCACTTGCTATTGAATTAAGCAAGCCACATAAATGTGAAGATCGTTATTTGGGTATCGAGAGCATAGTGGTGTTGCCTGCAGACAGAGGTGTTGAAAGTACAATTTGGCAATTGGCCAAAGCTCATGTTGTTGTAAATGACACCAACTATCATCAGCTCATAAGCCACTGGTTAAATACTCATGCAGTGATTGAGCCATTTGCCATAGCAACACACAGGAACCTCAGTGTACTTCACCCCATTTATAAACTTCTTCATCCTCACTTCCGTGACACCATAAATATCAATGCACTTGCTAGGAAATCCCTAATTACTGCAGGTGGCATTATAGAGCAAACTTTTTTGCCTGGACCGTATTCTATGGAGATGTCTTCGGCTGTATACAAGAATTGGGTTTTCACTGACCAAGCATTACCAAACGATCTCATCAAAAGAGGAATGGCGGTTAAGGATAACTCTGCCCCTCATGGCCTTAGCCTTGCGATAAAGGACTATCCTTATGCTGTTGATGGACTAGAAATATGGAATGCTATTAAGTCGTGGGTACAAAAGTACGTCTCTCTGTACTATTCAAAAGATGATGCAGTTCAACAAGATACTGAATTGCAAGCATGGTGGAAGGAAGTTCAGGAGAAAGGTCACCCTGACTTAAAAGATGCACAATGGCCAAAAATGCAGACTTCTGAAGAGCTGGTTGAAACTCTGAGTACCATTATATGGATTGGTTCAGCTCTTCATGCCGCTGTTAATTTTGGACAGTATCCTTATGGAGGTTACATTCTGAACCGTCCTACACAAAGCCGAAGATGGATACCAAAAGAAGGAACTCCAGAGTACATTGAGATGAGCAAGAATCCTCAAGAAGCATTTTTGAAAACAATTACTCCAAAGTACCAGACAGTTGTTGATCTTTCAGTGTTGGAGTTATTATCAACGCATTCTTCTGACGAGGTATATCTTGGGCAAAGGGACAGTTTGGACTGGACTGCTGATCAAAAGGCAAAAGTTTTGTTCACATCATTTACAGAACGCCTGAAACAGATTGAGGATGATATCTCTGACAGGAACCTTAACCAAGAACTTAAAAACCGAACTGGACCAATCAAATTGCCCTACACTGTGCTTCTTCCTACCAGTGAAAAGGGGATAACTTTCAGAGGAATCCCTAACAGTATCTCTATCTAA 2592 0.4101 MSSIVEKGKLVKGKVVLIRKTLIESLTNPKALIGTGFKLINSLVEDITKSVSFKLISRTKSQDTTNVAGKVGKDSYLENKASVLRTLEGIKEEFDIYFEWEDIHMGIPGAFYVTNRMNDEFFLVSLTLEYPAPTTDHDQNNIHFECNSWVHNQKFYKTDRIFFANIPYLPGKATPVTLQTYREEELKNLRGDGTGKREKWDRIYDYDVYNDLGFLPSDGQEDHPVLGGLKYPYPRRVRTGRKLIHNNKNGGEYEEPAEDNYVPRDENFSNVKGKEFRELGKESLGRVTPLLLSLYLKTTTNEFNGFEEVQRMYEGGVNLPISIPGNCTPSVLQFPPPNVIQESKFAWMTDEEFAREMIAGVNPVVIRRLKIEELASPCKPLCNCTQPSTITNEKLEINMNEVKVDERYMKLTVIIEIKFVEQALAQGRLFILDYYDAFMSYLTKINQLHSAKAYATRTFLYLKDDGTLKPLAIELSKPHKCEDRYLGIESIVVLPADRGVESTIWQLAKAHVVVNDTNYHQLISHWLNTHAVIEPFAIATHRNLSVLHPIYKLLHPHFRDTININALARKSLITAGGIIEQTFLPGPYSMEMSSAVYKNWVFTDQALPNDLIKRGMAVKDNSAPHGLSLAIKDYPYAVDGLEIWNAIKSWVQKYVSLYYSKDDAVQQDTELQAWWKEVQEKGHPDLKDAQWPKMQTSEELVETLSTIIWIGSALHAAVNFGQYPYGGYILNRPTQSRRWIPKEGTPEYIEMSKNPQEAFLKTITPKYQTVVDLSVLELLSTHSSDEVYLGQRDSLDWTADQKAKVLFTSFTERLKQIEDDISDRNLNQELKNRTGPIKLPYTVLLPTSEKGITFRGIPNSISI 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00339 863 Gene3D - 272 344 IPR027433 -
Phco1g00339 863 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 168 863 IPR013819 GO:0016702|GO:0046872
Phco1g00339 863 FunFam Lipoxygenase 499 862 - -
Phco1g00339 863 Gene3D - 498 862 - -
Phco1g00339 863 PANTHER LIPOXYGENASE 11 863 IPR000907 GO:0016702|GO:0034440|GO:0046872
Phco1g00339 863 Pfam PLAT/LH2 domain 62 163 IPR001024 GO:0005515
Phco1g00339 863 SUPERFAMILY Lipoxigenase 174 863 IPR036226 -
Phco1g00339 863 Gene3D - 169 271 - -
Phco1g00339 863 ProSiteProfiles PLAT domain profile. 27 164 IPR001024 GO:0005515
Phco1g00339 863 PRINTS Plant lipoxygenase signature 300 321 IPR001246 GO:0016491
Phco1g00339 863 PRINTS Plant lipoxygenase signature 232 251 IPR001246 GO:0016491
Phco1g00339 863 PRINTS Plant lipoxygenase signature 776 790 IPR001246 GO:0016491
Phco1g00339 863 PRINTS Plant lipoxygenase signature 134 152 IPR001246 GO:0016491
Phco1g00339 863 PRINTS Plant lipoxygenase signature 160 181 IPR001246 GO:0016491
Phco1g00339 863 PRINTS Plant lipoxygenase signature 200 216 IPR001246 GO:0016491
Phco1g00339 863 PRINTS Plant lipoxygenase signature 454 478 IPR001246 GO:0016491
Phco1g00339 863 ProSitePatterns Lipoxygenases iron-binding region signature 1. 520 534 IPR020833 GO:0016702|GO:0046872
Phco1g00339 863 Pfam Lipoxygenase 178 846 IPR013819 GO:0016702|GO:0046872
Phco1g00339 863 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 11 168 IPR036392 GO:0005515
Phco1g00339 863 ProSitePatterns Lipoxygenases iron-binding region signature 2. 547 557 IPR020834 GO:0016702|GO:0046872
Phco1g00339 863 Gene3D PLAT/LH2 domain 1 168 - -
Phco1g00339 863 Gene3D - 345 497 - -
Phco1g00339 863 SMART LH2_4 9 165 IPR001024 GO:0005515
Phco1g00339 863 PRINTS Lipoxygenase signature 540 560 IPR013819 GO:0016702|GO:0046872
Phco1g00339 863 PRINTS Lipoxygenase signature 520 537 IPR013819 GO:0016702|GO:0046872
Phco1g00339 863 PRINTS Lipoxygenase signature 502 519 IPR013819 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00339 Phco-Chr1 2530136 2533684 Tandem