Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00338 ATGTTTCTCTTTGACAAGAGCCAGAAGATCAAGGGTACTGTGGTGTTGATGCCAAAGAATGTGTTGGACGCCAACGAGTTAACCGCAGTGCAGAATGGAGGACTTGGTGGTGTTGTCTCTGGTTTCTTCGACGCCGTGGCCGACGTAGCAGGACAAGCTGTTGATACTGCAACTGCCATCTTAGCCCGTAATGTCTCCTTCAAGTTGATCAGTGCTACCTCCACTGATGCAAATGGAAACGGGAAAGTTGGAAAGGAAACGTACCTAGAGAAGCACGTTCCAACGTTACCAACCTTTGGAAACAGACGAGATGCATTCAATATTCATTTTGAATGGGATGCTAATTTTGGAATTCCTGGTGCATTTTACATCAGAAACTTTATGAATGATGAGTTCTTCCTCGTCAGTGTTACTCTTGAGGACATTCCAAATCATGCAACCATTCATTTTGTTTGCAACTCGTGGGTCTACAACTTTAAAAAGTACAAAAAAGATCGTATTTTCTTTGTCAATAATACATATCTGCCAAGTGCAACACCAGCTCCACTGGTTAAGTATAGGAAAGAAGAGTTGGAGGTTTTAAGAGGAGATGGAACAGGAGTACGCATGGAATGGGAAAGGATCTATGATTATGATGTGTACAATGATTTGGGGAACCCAGACAGTGATAAAACGCTTGCTCGTCCAGTTCTTGGAGGCTCCAGCACCTATCCCTACCCCCGTAGGGTTAGAACTGGTCGAAAAGCCACCAAAAATGATCCTAAAAGTGAGAAACTTGCGGGCGACATTTATATGCCAAGAGATGAAAAATTCGGGCATTTGAAGTCCTCAGATTTCCTCACATATGGATTAAAATCCTTGTCTCAACAACTCTTACCTTCTCTGGAAAACGTTTTTGACTCAGATTTGACATGGAACGAATTTGATAGCTTTGAAGAAGTGCGTCAGTTACATGAAGGTGGAATTAAGCTACCAACAGGTGCACTTAGCGACTTTAGTCCCTTACCAGTCTTCAAGGAACTTTTCAGATCTGATGGTGAAAATGCCCTTCAGCTTCCACCACCTCATGTTGTGAGAGTTAATAAATCTGCATGGATGACTGACGAGGAATTTGCAAGGGAAATGATTGCTGGTGTAAACCCAAATGTCATTCGTTGTCTTCAAGAGTTCCCTCCAAAAAGCAAGCTAGACCCCACTCTCTATGGTGATCAAACCAGTACCGTAACAAAACAAAAGTTGGAGATTAATATGGGTGGGGTCACAGTGGAAGAGGCACTTGCTGCAAAGAGATTATTCATATTAGATTACCAAGATGCATTCATTCCGTATTTGACGAGAATAAACAGTCTACCTACTGCAAAAGCTTATGCCACAAGAACAATTTTATTCTTGAAAGATGATGGCACTTTGAAGCCACTTGCTATCGAATTAAGCAAGCCACATCCAAGTGGAGATAATTTGGGTCCTGTGAGTAAAGTTGTGTTGCCTGCACTTGATGGTGTTGATAGCACAATTTGGCTATTGGCTAAGGCTCATGTAATAGTAAATGACTCTGGTTATCATCAACTCATCAGCCATTGGTTAAAAACTCATGCAGTGATTGAGCCATTTGCCATAGCAACAAACAGGCATCTCAGTGTGATTCACCCCATTTATAAACTTCTTTATCCTCACTATCGGGATACCATTAATATCAATGGACTTGCTAGGCAAAATCTGATTAATGCAAGTGGCATTATAGAACAGTCATTTTTGCCTGGAAAGTATTCTATGGAGATATCTTCAATTGCTTACAAGAATTGGATTTTCACTGACCAATCATTGCCAGCTGATCTCATCAAGAGAGGATTGGCAATTCAAGATCCTTCTGCTCTTCATGGCCTTCGTCTTCTCATAGAGGACTACCCTTATGCTGTTGATGGACTTGAAATATGGGATGCTATTAAGATATGGGTTCAAGAGTATGTCTCCTTGTATTACCCCACAGATGTGGCAATTCAACAAGATACTGAACTTCAAGCATGGTGGAAGGAAGCTGTAGAGAAGGGTCATGCTGACTTGAAAGATAAGCCTTGGTGGCCTAAAATGCAGACTATTCAAGAGCTTATTCAATCATGCTCCACCATCATATGGATTGCTTCAGCCCTTCATGCAGCTGTTAATTTTGGACAATATCCTTATGGAGGTTTTATCCTGAACCGTCCAACTCTCAGCAGAAGATTCATTCCAGAGCCAGGAACCAAAGAATATGATGAAATGGTGAAGAGTCCTCAGACTGCATATTTGAGAACCATTACACCAAAGCGCGAGGCCATTATTGATCTTACAGTGATAGAGATATTGTCAAGGCATGCCTCTGATGAGATCTACCTTGGGGAGAGAGATAATCCAAATTGGACATCTGATTCAAAGGCATTAGAAGCATTCAAAAGGTTTGGAAGCAAGTTGACAGAAATTGAAGCAAAAATCACAGCAAGAAACACCAATTCAACTATGAAAAACCGATATGGACCAGTTCAACTTCCATACACATTGCTCATTCCTACAAGTGAGGAAGGGTTGACTTTCAGAGGAATCCCCAATAGTGTCTCTATCTAG 2598 0.4145 MFLFDKSQKIKGTVVLMPKNVLDANELTAVQNGGLGGVVSGFFDAVADVAGQAVDTATAILARNVSFKLISATSTDANGNGKVGKETYLEKHVPTLPTFGNRRDAFNIHFEWDANFGIPGAFYIRNFMNDEFFLVSVTLEDIPNHATIHFVCNSWVYNFKKYKKDRIFFVNNTYLPSATPAPLVKYRKEELEVLRGDGTGVRMEWERIYDYDVYNDLGNPDSDKTLARPVLGGSSTYPYPRRVRTGRKATKNDPKSEKLAGDIYMPRDEKFGHLKSSDFLTYGLKSLSQQLLPSLENVFDSDLTWNEFDSFEEVRQLHEGGIKLPTGALSDFSPLPVFKELFRSDGENALQLPPPHVVRVNKSAWMTDEEFAREMIAGVNPNVIRCLQEFPPKSKLDPTLYGDQTSTVTKQKLEINMGGVTVEEALAAKRLFILDYQDAFIPYLTRINSLPTAKAYATRTILFLKDDGTLKPLAIELSKPHPSGDNLGPVSKVVLPALDGVDSTIWLLAKAHVIVNDSGYHQLISHWLKTHAVIEPFAIATNRHLSVIHPIYKLLYPHYRDTININGLARQNLINASGIIEQSFLPGKYSMEISSIAYKNWIFTDQSLPADLIKRGLAIQDPSALHGLRLLIEDYPYAVDGLEIWDAIKIWVQEYVSLYYPTDVAIQQDTELQAWWKEAVEKGHADLKDKPWWPKMQTIQELIQSCSTIIWIASALHAAVNFGQYPYGGFILNRPTLSRRFIPEPGTKEYDEMVKSPQTAYLRTITPKREAIIDLTVIEILSRHASDEIYLGERDNPNWTSDSKALEAFKRFGSKLTEIEAKITARNTNSTMKNRYGPVQLPYTLLIPTSEEGLTFRGIPNSVSI 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00338 865 FunFam Lipoxygenase 364 498 - -
Phco1g00338 865 FunFam Lipoxygenase 175 274 - -
Phco1g00338 865 ProSitePatterns Lipoxygenases iron-binding region signature 2. 548 558 IPR020834 GO:0016702|GO:0046872
Phco1g00338 865 Pfam Lipoxygenase 183 848 IPR013819 GO:0016702|GO:0046872
Phco1g00338 865 Gene3D - 275 363 IPR027433 -
Phco1g00338 865 Pfam PLAT/LH2 domain 74 169 IPR001024 GO:0005515
Phco1g00338 865 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 173 865 IPR013819 GO:0016702|GO:0046872
Phco1g00338 865 PANTHER LIPOXYGENASE 7 865 IPR000907 GO:0016702|GO:0034440|GO:0046872
Phco1g00338 865 ProSiteProfiles PLAT domain profile. 42 170 IPR001024 GO:0005515
Phco1g00338 865 Gene3D - 364 498 - -
Phco1g00338 865 SUPERFAMILY Lipoxigenase 175 865 IPR036226 -
Phco1g00338 865 PRINTS Lipoxygenase signature 503 520 IPR013819 GO:0016702|GO:0046872
Phco1g00338 865 PRINTS Lipoxygenase signature 521 538 IPR013819 GO:0016702|GO:0046872
Phco1g00338 865 PRINTS Lipoxygenase signature 541 561 IPR013819 GO:0016702|GO:0046872
Phco1g00338 865 FunFam Lipoxygenase 500 864 - -
Phco1g00338 865 Gene3D - 175 274 - -
Phco1g00338 865 PRINTS Plant lipoxygenase signature 456 480 IPR001246 GO:0016491
Phco1g00338 865 PRINTS Plant lipoxygenase signature 778 792 IPR001246 GO:0016491
Phco1g00338 865 PRINTS Plant lipoxygenase signature 389 408 IPR001246 GO:0016491
Phco1g00338 865 PRINTS Plant lipoxygenase signature 140 158 IPR001246 GO:0016491
Phco1g00338 865 PRINTS Plant lipoxygenase signature 350 366 IPR001246 GO:0016491
Phco1g00338 865 PRINTS Plant lipoxygenase signature 166 187 IPR001246 GO:0016491
Phco1g00338 865 PRINTS Plant lipoxygenase signature 205 221 IPR001246 GO:0016491
Phco1g00338 865 PRINTS Plant lipoxygenase signature 238 257 IPR001246 GO:0016491
Phco1g00338 865 PRINTS Plant lipoxygenase signature 305 326 IPR001246 GO:0016491
Phco1g00338 865 SMART LH2_4 8 171 IPR001024 GO:0005515
Phco1g00338 865 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 8 174 IPR036392 GO:0005515
Phco1g00338 865 CDD PLAT_LH2 9 171 IPR042057 -
Phco1g00338 865 Gene3D - 499 864 - -
Phco1g00338 865 Gene3D PLAT/LH2 domain 1 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00338 Phco-Chr1 2520649 2525860 Dispersed/Tandem