Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00337 ATGAGTTCATTAGTGGAGAAGGGAAAGTTGGTGAAGGGGAGGGTGGTGTTGATTCGGAAGAGACTGGTTGAAGCCCTAACCAGCGCCAACGATCTCATTAGCACTGGCATCAAGCTAATTGACAATTCAGTCGAATATGATATCACTAAATCTGTGTCTTTCAAGTTGATTAGTCGTACCAAGTCACATAATCCAAAAAATGTGGCTGGGAAAGTTGGAAAGGATAGCTATTTGGAGAATAAGGCTTCTGTGTTACGAAGCTTGGGGGGCACCGAGGAGGAATTCGATATTTATTTTGAATGGGATGATAATGATATGGGAATTCCAGGAGCATTCTACGTAACAAACCGAATGAATGATGAGTTCTTACTTGTTAGTGTCACTCTCGAATATCCAACAAATGAACACGACCAAAACAATATTCACTTTGTGTGTAACTCGTGGGTTTACAACCATAAATGTTACAAAACGGATCGCATTTTCTTTGCCAACATTCCATATCTTCCTGGTAAAGGGACACCAGTGGCATTACAAAGGTACAGAGAAGAAGAGTTGAAGACTTTAAGGGGAAATGGAAGTGGAAAGCTTGAGAAATGGGATAGGATTTATGAATATGAAGTCTATAATGATCTGGGCTTTCTAGACAGCGATGGACCACAGGAACACCCAGTTCTTGGAGGCCATAAATATCCCTATCCTCGTAGGACTAGAACTGGGGGAAAACTCATCCGCAATTACAAGAATGGTGAGGAATACGAGGAACCAGCCAAGGTTATTTATATTCCAAGAGATGAACATTTCAGTCACGAGAAGGCTAAAGAATTCCTTGAATTGGGAAAAAAAAGTTTTGAAAGAGTCCAACCCTTGCTTCTATCTTTATACTTAAAGACCACAACAAACGAATTTAATGGCTTCGAAGAAGTGCAGAGACTGTATGAAGGTGGCCTTAATCTGCCTATATCTATCACTGGGAATGGTACTCCAAGTGTCCTTCAGTTCCCACTACCTAATGTAATCCAAGAAAGCAACTTTGCATGGATGACTGATGAAGAATTTGCAAGAGAGATGATTGCCGGTACAAACCCAGTTGTAATTCGCCTTCTTAAAAAGGAAGATCTCATATCGCCATGCAAGCTACTTTGCAACTGTTTTCCAGCCAGTACAATAATAAAAGAAAAGTTGGAGATCAACATGAATGGGGTCAAAGTAGATGAGGCAATGGCCTATGAGAGATTGTTCATATTAGATTACAGTGACGCATTCATGTCGTATTTGACGAAGATAAACGAGCTTCCTTCTGCAAAGGCTTATGCCACTAGGACATTCTTGTTCTTGAAAGATGATGGGACATTGAAACCACTTGCTATTGAATTAAGCAAGCCACATAAATGTGGACATCGTTATTTGGGTACCGAGAGCATAGTGGTGTTGCCTGCAGACAGAGGTGTTGAAAGTACAATTTGGCAGTTGGCCAAAGCTCATGTCATTGTAAATGACACCAACTATCATGAACTCGTAAGCCACTGGTTAAATACTCATGCAGTGATTGAGCCATTTGTCATAGCAACACACAGAAACCTCAGTGTACTTCACCCCATTTATAAACTTCTTTTTCCTCACTTTCGTGACACCATAAATATCAATACACTTGCTAGGAAATCCCTAATTAATGCAGGTGGCATTATAGAGGAAACTTTTTTGCCTGGACCGTATTCTATGGAGATGTCTTCGGCTGTATACAAGAATTGGGTTTTCACTGACCAAGCATTACCAAACGATCTCATCAAAAGAGGAATGGCGGTTAAGGATGACTCTGCCCCTCATGGCCTTAGCCTTGCGATAAAGGACTATCCTTATGCGGTTGATGGACTAGAAATATGGGATGCTATTAAGTTGTGGGTACAAAAGTACGTCTCTCTGTACTATTCAGAAGATGATGCAATTGAACAAGATACTGAATTGCAAACATGGTGGAAGGAAGTTAAGGAGAAAGGTCACCCAGACTTAGAAGCTGCACAATGGCCAAAATTGCAGACTTCTGAAGAGCTGGTTGAAACTCTGAGTACCATTATATGGATTGGTTCAGCTCTTCATGCCGCTGTTAATTTTGGACAGTATCCTTATGGAGGTTATATGTTGAACCGTCCTACACAAAGCCGAAGATGGATCCCAACACGAGGAACTGGAGAGTATGATGAGATGAGGAAGAATCCTCAAGAAGCTTTTTTGAAAACAATTACTCCAAAGTACCAGACAGTTATTGATCTTTCAGTGTTGGAGTTATTATCAACGCATTCTTCTGACGAGGTATATCTTGGACAAAGGGACAGTCTAAACTGGACTGCTGATCAAAATGCAAAAGATTTGTTGAAAACATTTACAGAAGAGCTAAAACAGATTGAGAGTGAGATCTCTAAAAGAAATCATAACAAAGAACTTAAAAACCGAACTGGACCAGTCAAATTGCCCTACACTGTGCTTCTTCCTACCAGTAAACCAGGGATAACTTTTAGAGGAATCCCTAACAGTGTTTCTATCTAA 2541 0.4046 MSSLVEKGKLVKGRVVLIRKRLVEALTSANDLISTGIKLIDNSVEYDITKSVSFKLISRTKSHNPKNVAGKVGKDSYLENKASVLRSLGGTEEEFDIYFEWDDNDMGIPGAFYVTNRMNDEFLLVSVTLEYPTNEHDQNNIHFVCNSWVYNHKCYKTDRIFFANIPYLPGKGTPVALQRYREEELKTLRGNGSGKLEKWDRIYEYEVYNDLGFLDSDGPQEHPVLGGHKYPYPRRTRTGGKLIRNYKNGEEYEEPAKVIYIPRDEHFSHEKAKEFLELGKKSFERVQPLLLSLYLKTTTNEFNGFEEVQRLYEGGLNLPISITGNGTPSVLQFPLPNVIQESNFAWMTDEEFAREMIAGTNPVVIRLLKKEDLISPCKLLCNCFPASTIIKEKLEINMNGVKVDEAMAYERLFILDYSDAFMSYLTKINELPSAKAYATRTFLFLKDDGTLKPLAIELSKPHKCGHRYLGTESIVVLPADRGVESTIWQLAKAHVIVNDTNYHELVSHWLNTHAVIEPFVIATHRNLSVLHPIYKLLFPHFRDTININTLARKSLINAGGIIEETFLPGPYSMEMSSAVYKNWVFTDQALPNDLIKRGMAVKDDSAPHGLSLAIKDYPYAVDGLEIWDAIKLWVQKYVSLYYSEDDAIEQDTELQTWWKEVKEKGHPDLEAAQWPKLQTSEELVETLSTIIWIGSALHAAVNFGQYPYGGYMLNRPTQSRRWIPTRGTGEYDEMRKNPQEAFLKTITPKYQTVIDLSVLELLSTHSSDEVYLGQRDSLNWTADQNAKDLLKTFTEELKQIESEISKRNHNKELKNRTGPVKLPYTVLLPTSKPGITFRGIPNSVSI 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00337 846 PRINTS Lipoxygenase signature 503 520 IPR013819 GO:0016702|GO:0046872
Phco1g00337 846 PRINTS Lipoxygenase signature 485 502 IPR013819 GO:0016702|GO:0046872
Phco1g00337 846 PRINTS Lipoxygenase signature 523 543 IPR013819 GO:0016702|GO:0046872
Phco1g00337 846 Gene3D - 271 343 IPR027433 -
Phco1g00337 846 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 167 846 IPR013819 GO:0016702|GO:0046872
Phco1g00337 846 Gene3D - 344 480 - -
Phco1g00337 846 Pfam PLAT/LH2 domain 67 162 IPR001024 GO:0005515
Phco1g00337 846 ProSiteProfiles PLAT domain profile. 27 163 IPR001024 GO:0005515
Phco1g00337 846 SMART LH2_4 9 164 IPR001024 GO:0005515
Phco1g00337 846 Coils Coil 783 810 - -
Phco1g00337 846 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 11 167 IPR036392 GO:0005515
Phco1g00337 846 Gene3D - 481 845 - -
Phco1g00337 846 SUPERFAMILY Lipoxigenase 173 846 IPR036226 -
Phco1g00337 846 PANTHER LIPOXYGENASE 48 846 IPR000907 GO:0016702|GO:0034440|GO:0046872
Phco1g00337 846 Gene3D PLAT/LH2 domain 1 167 - -
Phco1g00337 846 ProSitePatterns Lipoxygenases iron-binding region signature 1. 503 517 IPR020833 GO:0016702|GO:0046872
Phco1g00337 846 PRINTS Plant lipoxygenase signature 299 320 IPR001246 GO:0016491
Phco1g00337 846 PRINTS Plant lipoxygenase signature 159 180 IPR001246 GO:0016491
Phco1g00337 846 PRINTS Plant lipoxygenase signature 231 250 IPR001246 GO:0016491
Phco1g00337 846 PRINTS Plant lipoxygenase signature 437 461 IPR001246 GO:0016491
Phco1g00337 846 PRINTS Plant lipoxygenase signature 199 215 IPR001246 GO:0016491
Phco1g00337 846 PRINTS Plant lipoxygenase signature 133 151 IPR001246 GO:0016491
Phco1g00337 846 PRINTS Plant lipoxygenase signature 759 773 IPR001246 GO:0016491
Phco1g00337 846 ProSitePatterns Lipoxygenases iron-binding region signature 2. 530 540 IPR020834 GO:0016702|GO:0046872
Phco1g00337 846 Gene3D - 168 270 - -
Phco1g00337 846 Pfam Lipoxygenase 177 829 IPR013819 GO:0016702|GO:0046872
Phco1g00337 846 FunFam Lipoxygenase 482 845 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00337 Phco-Chr1 2511553 2514968 Tandem