Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00335 ATGCCCAAGAATGTGTTGGACTTCAACGCCATCTCCTCCATTCCTGGCGGCGGCATAGGCGGAGCAGTGGGTGGCATCGTGGGCGGCGTCACCAATGTAATTGGCGGAGCAGTTGACGCTGCCACCGCCTTCTTAGGACGAAACGTTTCCCTGCAATTGATCAGTGCTACTCAGACTCGTGGTGGAAAAGGGAAAGTGGGAAACGAAGAATATTTGAACAGTCGTCTTCCAACCTTACCAACATTGGGAGCAAGACAAGACGCATTCAGTATTTACTTTGAATGGGATGTTAACTTTGGAATTCCGGGAGCATTTTACATCAGAAACTTTAAGACTGATGAGTTTTTCCTAGTCAGTGTAACTCTTGAAGACATTCCAAACCATGGAACCATTCACTTTGTCTGTAACTCCTGGGTTTATAACTTCAGAAACTACAAAAAGGATCGTATTTTCTTTGTCAACAATACATATCTTCCAAGTGCAACACCAGCTGCACTAGTTAAGTACAGAGAAGAAGAATTGGAGACTTTAAGAGGAGATGGAACAGGGAAACGCAAGGAATTTGATAGGATCTATGACTATGATGTGTATAATGATTTGGGCAACCCAGATGCTGGTGATTCTCGTCATATCCTTGGTGGCTCTAGCAACTATCCATACCCTCGCAGGGTTAGAACTGGTAGAGACAAAAGCAAGAAAGATCCTAACAGTGAGACACCAGGCGATATTTATGTTCCAAGAGATGAAAATTTTGGTCATTTGAAGTCATCGGATTTTCTTATGTATGGACTCAAATCCTTATCTCAGAGTGTGATACCTTTGTTAAAGTCTGCAATTTTTGAGTTAAAGGTCACATCAAGTGAGTTTAAGAGCTTCGACGATGTGCGTAGTCTGTATGAGGGTGGAATTAAGCTGCCAACAGATATTTTGAGCCAAATTAGTCCCTTACCAGCCCTCAAGGAAATCTTCCGCACTGATGGTGAAAATACTCTTCAATTTCCACCCCCTCATGTAATCAGAGTTAGCAAGTCTGCATGGATGACTGATGATGAATTTGCAAGAGAGATGATTGCTGGTGTAAATCCTAATGTAATTCGTCGTCTGCAAGAATTTCCACCAAAAAGCACACTTGATCCCACAGTCTATGGTGATCACACTAGTACCATCACAAAAGAACAGTTAGAGATCAACATGGATGGGGTCACATTAGAAGAGGCACTTGGTACAAACAGATTGTTCATACTAGATTACCATGATGCATTCATGCCTTACTTGAGGAGGATAAACGACCTACCAACAGCAAAAGCTTATGCTACAAGGACAATCGTATTCCTGAAACATGATGGATCTTTAAAGCCACTTGTTATCGAATTAAGCAAGCCACATCCTGGTGGAGACAATTTAGGTGCTGTGAGTAAAGTCGTGCTGCCTGCAACAGAAGGTGTTGAAAGTACAATTTGGTTGTTGGCCAAAGCTCATGTAATTGTGAATGACTCTGGCTATCATCAGCTCATAAGTCATTGGCTATATACTCATGCTACGATAGAGCCATTTGCCATAGCAACAAATAGACATCTCAGTGTGCTTCATCCCATTTATAAACTTCTCTATCCTCACTACCGTGACACCATAAATATCAATGGCCTTGCTAGGCAATCCCTAATCAATGCAGGTGGCATTATTGAGCAAGCATTTTTACCTGGAAAGTACTCTATAGAGATTTCCTCAGTTGTTTACAAGAATTGGGTTTTCACAGACCAAGCATTACCAGCTGATCTCGTCAAGAGGGGATTAGCAGTTGAGGATCCCTCTGCTCCTCATGGCCTTCGTCTTGTGATAGAGGACTACCCTTATGCTGTTGATGGACTAGAAATATGGGATGCTATTAAGACATGGGTCCAAGACTATGTCTCCTTATATTACCCTACAGATGCATCACTAAAACAAGATATTGAGCTGCAAGCTTGGTGGAAGGAAGTTGTTGAAAAGGGTCATGGTGACTTAAAAGATAAGCCTTGGTGGCCTAAAATGCAAACTATTGAAGATCTCATTACATCTTGCTCTATTATCATATGGATAGCTTCTGCTCTTCATGCTGCTGTTAATTTTGGACAATATCCTTATGGAGGCTATATTGTGAATCGTCCAACTCTCAGCAGAAGATTTATCCCAGAACCAGGAACCAAAGAATATGATGAGATGGTGAAGGATCCCCAAAAGGCTTATTTGCAAACAATCACACCTAAGTATGAGACCATTATTGACATTTCAGTGATAGAGATATTGTCAAGGCATGCTTCTGATGAGATCTACCTTGGGGAGAGGGATAATCCAAATTGGACAACCGATTCAAAGGCACTAGAAGCTTTAAAAAAGTTTGGAAGCAAACTGACAGAAATTGAAAGAAAGATCACAGCAAGAAACAGTGATCCAAGTTTGAAAAGTCGATATGGGCCAGTTGAGTTGCCATACACCTTACTCCTTCGTTCCAGTAAGGAAGGGTTGACTTTCAGAGGAATTCCCAACAGTATCTCTATCTAG 2541 0.4168 MPKNVLDFNAISSIPGGGIGGAVGGIVGGVTNVIGGAVDAATAFLGRNVSLQLISATQTRGGKGKVGNEEYLNSRLPTLPTLGARQDAFSIYFEWDVNFGIPGAFYIRNFKTDEFFLVSVTLEDIPNHGTIHFVCNSWVYNFRNYKKDRIFFVNNTYLPSATPAALVKYREEELETLRGDGTGKRKEFDRIYDYDVYNDLGNPDAGDSRHILGGSSNYPYPRRVRTGRDKSKKDPNSETPGDIYVPRDENFGHLKSSDFLMYGLKSLSQSVIPLLKSAIFELKVTSSEFKSFDDVRSLYEGGIKLPTDILSQISPLPALKEIFRTDGENTLQFPPPHVIRVSKSAWMTDDEFAREMIAGVNPNVIRRLQEFPPKSTLDPTVYGDHTSTITKEQLEINMDGVTLEEALGTNRLFILDYHDAFMPYLRRINDLPTAKAYATRTIVFLKHDGSLKPLVIELSKPHPGGDNLGAVSKVVLPATEGVESTIWLLAKAHVIVNDSGYHQLISHWLYTHATIEPFAIATNRHLSVLHPIYKLLYPHYRDTININGLARQSLINAGGIIEQAFLPGKYSIEISSVVYKNWVFTDQALPADLVKRGLAVEDPSAPHGLRLVIEDYPYAVDGLEIWDAIKTWVQDYVSLYYPTDASLKQDIELQAWWKEVVEKGHGDLKDKPWWPKMQTIEDLITSCSIIIWIASALHAAVNFGQYPYGGYIVNRPTLSRRFIPEPGTKEYDEMVKDPQKAYLQTITPKYETIIDISVIEILSRHASDEIYLGERDNPNWTTDSKALEALKKFGSKLTEIERKITARNSDPSLKSRYGPVELPYTLLLRSSKEGLTFRGIPNSISI 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00335 846 Pfam PLAT/LH2 domain 61 152 IPR001024 GO:0005515
Phco1g00335 846 Gene3D - 480 845 - -
Phco1g00335 846 Gene3D PLAT/LH2 domain 1 157 - -
Phco1g00335 846 PRINTS Lipoxygenase signature 522 542 IPR013819 GO:0016702|GO:0046872
Phco1g00335 846 PRINTS Lipoxygenase signature 484 501 IPR013819 GO:0016702|GO:0046872
Phco1g00335 846 PRINTS Lipoxygenase signature 502 519 IPR013819 GO:0016702|GO:0046872
Phco1g00335 846 SUPERFAMILY Lipoxigenase 158 846 IPR036226 -
Phco1g00335 846 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 1 157 IPR036392 GO:0005515
Phco1g00335 846 FunFam Lipoxygenase 345 479 - -
Phco1g00335 846 PRINTS Plant lipoxygenase signature 123 141 IPR001246 GO:0016491
Phco1g00335 846 PRINTS Plant lipoxygenase signature 286 307 IPR001246 GO:0016491
Phco1g00335 846 PRINTS Plant lipoxygenase signature 219 238 IPR001246 GO:0016491
Phco1g00335 846 PRINTS Plant lipoxygenase signature 370 389 IPR001246 GO:0016491
Phco1g00335 846 PRINTS Plant lipoxygenase signature 149 170 IPR001246 GO:0016491
Phco1g00335 846 PRINTS Plant lipoxygenase signature 331 347 IPR001246 GO:0016491
Phco1g00335 846 PRINTS Plant lipoxygenase signature 437 461 IPR001246 GO:0016491
Phco1g00335 846 PRINTS Plant lipoxygenase signature 188 204 IPR001246 GO:0016491
Phco1g00335 846 PRINTS Plant lipoxygenase signature 759 773 IPR001246 GO:0016491
Phco1g00335 846 FunFam Lipoxygenase 481 845 - -
Phco1g00335 846 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 156 846 IPR013819 GO:0016702|GO:0046872
Phco1g00335 846 Pfam Lipoxygenase 166 828 IPR013819 GO:0016702|GO:0046872
Phco1g00335 846 Gene3D - 158 254 - -
Phco1g00335 846 Gene3D - 255 343 IPR027433 -
Phco1g00335 846 Gene3D - 344 479 - -
Phco1g00335 846 ProSiteProfiles PLAT domain profile. 26 153 IPR001024 GO:0005515
Phco1g00335 846 ProSitePatterns Lipoxygenases iron-binding region signature 2. 529 539 IPR020834 GO:0016702|GO:0046872
Phco1g00335 846 PANTHER LIPOXYGENASE 41 846 IPR000907 GO:0016702|GO:0034440|GO:0046872
Phco1g00335 846 MobiDBLite consensus disorder prediction 223 237 - -
Phco1g00335 846 SMART LH2_4 1 154 IPR001024 GO:0005515
Phco1g00335 846 MobiDBLite consensus disorder prediction 207 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00335 Phco-Chr1 2496497 2501841 Tandem