Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00334 ATGTTAGGTGGCATCTTTGACAAGGGTCAGAAGATAAAGGGCACTGTGGTGTTGATGCCCAAGAATGTGTTGGACTTCAACGCCATAACTTCCATTGGTAAGGACGGCGTTACCGGCACTGTCAAAGATGTCTTTGGCGTTGCCACCGACTTAGCTGGTGGAGCACTTGATGCTGCAACTTCCTTCTTAGGCCAAAATGTTTCCTTGCACTTGATCAGTGCTACTCAGGCTGATGCTAGTGGAAAAGGAAAAGTTGGAAAGAAAACATATTTGGATAAACGTCTTCCGACCTTACCAACACTGGGAGCAAGACAAGACGCATTTAGTATTTACTTTGAATGGGATGCAAATTTTGGAATTCCAGGAGCATTTTACATCAGAAACTATACGACTGATGAATTTTTCCTCGTCAGTGTCACTCTTGAGGACATTCCAAATCGTGGAACCATTCACTTTGTATGTAACTCATGGGTTTATAACTTCAAGAAATACGAAAAGGATCGCATTTTCTTTGTGAATGATACATATCTTCCAAGTGCAACACCAGCTCCATTACTGAAGTACAGACAAGAAGAATTGGAGACTCTTAGAGGAGATGGAACTGGTAAACGCCAGGAATATGATAGAATCTATGACTATGATGTTTATAACGATTTGGGCAATCCAGATGGTGGAGATCCTCGTCCAATCCTTGGAGGATCTGTCATCCATCCTTACCCTCGTAGGGTTAGAACTGGTAGAGAACGAACCAGGACAGATCCCAACAGTGAGAAACCAGGCTCGATTTATGTTCCAAGAGATGAAAATTTTGGTCACTTGAAGTCATCAGATTTCCTTATGTATGGAATAAAATCTTTATCTCAGACTGTGCTACCTTTATTAAAATCTGCAATTTTTGACTTAAAGGTCACATCAAGTGAGTTTAAGAGCTTCGACGATGTGCGTAGTTTGTATGAGGGTGGAATTAAGCTGCCAACAGATATATTGAGACAAATTAGCCCCTTACCAGCCCTCAAAGAAATCTTTCGCACTGATGGTGAAAATACTCTTCAATTTCCACCACCTCACGTAATCCAAGTTAAAAAATCTGAATGGATGACTGATGAAGAATTTGCAAGAGAAGTGATTGCTGGTGTCAATCCAAATGTAGTTCGTCGTCTTCAGGAATTCCCACCAAAAAGTTCGCTTGATCCCTCTCTCTATGGTGATCAAACTAGTACCATAACAAAAGAAGATTTGGAGATCAACATGGATGGAGTCACAGTAGATGAGGCACTTGCTGCAAAGAGATTATTCATATTAGATTACCAAGATGCATTCTTTCCATATTTGACGAGGATAAACAGCCTACCTGTTGCAAGAGCTTATGCCACCAGAACAATCTTATTCTTGAAAGATGATGGCACTTTGAAGCCACTTGCTATCGAATTAAGCAAGCCACATCCAGGTGGAGATAATTTGGGTCCTGTGAGCAAAGTTGTGTTGCCTGCACTTGTTGGTGTTGATAGCACAATTTGGCTATTGGCCAAGGCTCATGTAATTGTAAATGACTCTGGTTATCATCAGCTCATGAGTCATTGGTTAAATACTCATGCAGTGATGGAGCCATTTGCCATAGCAACAAACAGACATCTTAGTGTGCTTCACCCCATTTATAAACTTCTCTATCCTCACTACCGTGATACCATAAATATCAATGGACTTGCTAGGCAATCTTTGATTAATGCAGGTGGCATTATAGAGCAATCATTTTTGCCCGGAAAGTACTCTATTGAGATGTCTTCAGCCGTTTACAAGAACTGGGTTTTTACTGATCAAGCATTGCCCGCAGATCTCGTCAAGAGAAGAGTGGCAGTTGAGGATCCATCTTCCCCCCATGGACTTCGTCTCTTGATAAAGGACTACCCTTATGCTGTTGATGGACTAGAAATTTGGGATGCTATTAAGTCATGGGTCCAAGAGTATGTCTCATTGTATTACCCAACCGATGTGGCAGTTCAACAAGATACTGAACTCCAAGCATGGTGGAAGGAAGTTGTAGAGAAGGGTCATGCTGACTTGAAAGATAAGCCTTGGTGGCCTAAAATGCAGACTATTGAAGCTCTGGTTAAATCTTGCTCTATTATTGTATGGACAGCTTCTGCTCTTCATGCAGCTGTTAATTTTGGACAATATCCTTATGGAGGTTATATAGTGAACCGTCCAACTCTCAGCAGAAGGTTTATCCCTGAACCAGGAACTCCAGAATATGATGAGATGGTGAGCAGTTATCAAAAGGCTTATTTGAAAACAATCACACCCAAGTTTGAGACCCTTATTGACCTTTCAGTGATAGAGATATTGTCAAGGCATGCTTCTGATGAAGTCTACCTTGGACAGAGGGATACTCCAAACTGGACCACTGATAATAAGGCCTTAGAAGCTTTCAAAAGGTTTGGAAGCAAACTTACTGAGATTGAAGGGAAAATCAATGCAAGGAACAGTGATCCGAGTCTGAGAAACCGATCTGGACCAGTTCAACTGCCATACACATTGCTCCATCGTTCAAGTGAAGAAGGGTTAACTTTCAAGGGAATTCCCAACAGCATCTCCATCTAA 2598 0.4149 MLGGIFDKGQKIKGTVVLMPKNVLDFNAITSIGKDGVTGTVKDVFGVATDLAGGALDAATSFLGQNVSLHLISATQADASGKGKVGKKTYLDKRLPTLPTLGARQDAFSIYFEWDANFGIPGAFYIRNYTTDEFFLVSVTLEDIPNRGTIHFVCNSWVYNFKKYEKDRIFFVNDTYLPSATPAPLLKYRQEELETLRGDGTGKRQEYDRIYDYDVYNDLGNPDGGDPRPILGGSVIHPYPRRVRTGRERTRTDPNSEKPGSIYVPRDENFGHLKSSDFLMYGIKSLSQTVLPLLKSAIFDLKVTSSEFKSFDDVRSLYEGGIKLPTDILRQISPLPALKEIFRTDGENTLQFPPPHVIQVKKSEWMTDEEFAREVIAGVNPNVVRRLQEFPPKSSLDPSLYGDQTSTITKEDLEINMDGVTVDEALAAKRLFILDYQDAFFPYLTRINSLPVARAYATRTILFLKDDGTLKPLAIELSKPHPGGDNLGPVSKVVLPALVGVDSTIWLLAKAHVIVNDSGYHQLMSHWLNTHAVMEPFAIATNRHLSVLHPIYKLLYPHYRDTININGLARQSLINAGGIIEQSFLPGKYSIEMSSAVYKNWVFTDQALPADLVKRRVAVEDPSSPHGLRLLIKDYPYAVDGLEIWDAIKSWVQEYVSLYYPTDVAVQQDTELQAWWKEVVEKGHADLKDKPWWPKMQTIEALVKSCSIIVWTASALHAAVNFGQYPYGGYIVNRPTLSRRFIPEPGTPEYDEMVSSYQKAYLKTITPKFETLIDLSVIEILSRHASDEVYLGQRDTPNWTTDNKALEAFKRFGSKLTEIEGKINARNSDPSLRNRSGPVQLPYTLLHRSSEEGLTFKGIPNSISI 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00334 865 ProSitePatterns Lipoxygenases iron-binding region signature 1. 521 535 IPR020833 GO:0016702|GO:0046872
Phco1g00334 865 Gene3D PLAT/LH2 domain 2 176 - -
Phco1g00334 865 ProSitePatterns Lipoxygenases iron-binding region signature 2. 548 558 IPR020834 GO:0016702|GO:0046872
Phco1g00334 865 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 9 176 IPR036392 GO:0005515
Phco1g00334 865 PRINTS Lipoxygenase signature 503 520 IPR013819 GO:0016702|GO:0046872
Phco1g00334 865 PRINTS Lipoxygenase signature 541 561 IPR013819 GO:0016702|GO:0046872
Phco1g00334 865 PRINTS Lipoxygenase signature 521 538 IPR013819 GO:0016702|GO:0046872
Phco1g00334 865 Gene3D - 499 864 - -
Phco1g00334 865 FunFam Lipoxygenase 364 498 - -
Phco1g00334 865 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 175 865 IPR013819 GO:0016702|GO:0046872
Phco1g00334 865 CDD PLAT_LH2 11 173 IPR042057 -
Phco1g00334 865 ProSiteProfiles PLAT domain profile. 45 172 IPR001024 GO:0005515
Phco1g00334 865 MobiDBLite consensus disorder prediction 245 264 - -
Phco1g00334 865 SUPERFAMILY Lipoxigenase 177 865 IPR036226 -
Phco1g00334 865 PANTHER LIPOXYGENASE 9 865 IPR000907 GO:0016702|GO:0034440|GO:0046872
Phco1g00334 865 Gene3D - 177 273 - -
Phco1g00334 865 FunFam Lipoxygenase 500 864 - -
Phco1g00334 865 Pfam Lipoxygenase 185 847 IPR013819 GO:0016702|GO:0046872
Phco1g00334 865 Gene3D - 363 498 - -
Phco1g00334 865 Pfam PLAT/LH2 domain 74 171 IPR001024 GO:0005515
Phco1g00334 865 Gene3D - 274 362 IPR027433 -
Phco1g00334 865 PRINTS Plant lipoxygenase signature 456 480 IPR001246 GO:0016491
Phco1g00334 865 PRINTS Plant lipoxygenase signature 207 223 IPR001246 GO:0016491
Phco1g00334 865 PRINTS Plant lipoxygenase signature 305 326 IPR001246 GO:0016491
Phco1g00334 865 PRINTS Plant lipoxygenase signature 142 160 IPR001246 GO:0016491
Phco1g00334 865 PRINTS Plant lipoxygenase signature 778 792 IPR001246 GO:0016491
Phco1g00334 865 PRINTS Plant lipoxygenase signature 350 366 IPR001246 GO:0016491
Phco1g00334 865 PRINTS Plant lipoxygenase signature 389 408 IPR001246 GO:0016491
Phco1g00334 865 PRINTS Plant lipoxygenase signature 168 189 IPR001246 GO:0016491
Phco1g00334 865 PRINTS Plant lipoxygenase signature 238 257 IPR001246 GO:0016491
Phco1g00334 865 SMART LH2_4 10 173 IPR001024 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00334 Phco-Chr1 2489649 2493918 Tandem