Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00333 ATGTATGTCTGCACTTTATATTTGGATGCTCTCAGTTTATATATAATAAATAAATCTTTTTCAATATCATTGCAGATTATCTATGATACGATCTACCGTGCAGATCGGGATGCTTCCAAGTGGCTGTCCGGCCCCCACCGGCACATATGCATTCTAACTCTATTACTTTATCATAATCCTAAAAGTGAGAGTCGCAGTGACTCTGTTTATCTTCCCAGGGATGAATCATTTGGCCACTTGAAGTCATTAGATTTCCTTGTTTATATACTTAAATCTGCATCTCAAAATGTGATACCTCAATTGCAATCTGCACTTAGATTACAATTCAATCAACCTGAGTTTACTAGCTTTGATGACTTGCGTGGACTCTATGATGGTGGAATTAAGTTACCTACTGATGCACTTGGCAAGCTTCCTATACCATTGTTCAATGAACTCTTTCGTACTGATGGGGAGCAGGTCCTTAAGTTTCCACCACCTAAAGTAATTCAAGTAGTGGACCAGTCTGCATGGATGACTGATGAAGAGTTTGCAAGAGAGATGATGCTGGAGTTTCCACCTAAGAGCAAGCTAGATAGCCAACTCTATGGTGATAATACCAGTACAATTACCGGAGAACACTTGGAGCCTAACTTGGGTGGCCTCACTGTAGAACAGAAGCAGAAGTGGACGCAGGACGAAGAAGACGCGCTCATCGCCGGAGTTGAAAAGCACGGTCCCGGAAAGTGGAAGAACATTCTCAAAGACCCCCAATTCGCCCCTTTTCTCACTTCCCGTTCCAACATCGACCTCAAGGACAAATGGCGGAATTTGAGCGTCAGTAACGGTTCTCAAGGCTCTAAAGACAAACCTAGGGTTCCTAAGCTCAAGGCTCTTCCTGCTCCTCCTTCTGCTACTACCTCCTCCACCACCACCACTCCTAAAAACGCGGCTTCTGCTCTTCAAAACGCACAGTCTGATGTCGCTGTCCCCTATTCTTCTCTGAATGACCAAGATGTCAAAAATCCTCCGAGGTATAATGCAATGGTTTTTGAAGCTCTATCAGCACTAAAAGATAATAATGGATCAGACCTAAATGCCATTGTTACTTTCATCGAGCAAAAACATCAGGTTCCTCAAAATTTTAGAAGGGCATTAAGTACAAGGTTGAGGAGGCTTGTTAGTCAAGGGAAACTTGAAAAGCTACAAAATTGTTACAAAATAAAAAAGGATGTCCCCTCAGGAACAAAATCACCTTTACCAAGACCAAAGCATGTCCGACCAGCACCGTCACAACCACAACCACAATGGCAATCCTCAGCTTCTGTCTTTACAGCATCTAATGAGACAATAAAGGAAGCTGCAGATACTGCAGCCTATAGAATTGCCGATGCTGAAAGTAAATCATATCTGGCTGCAGAAGCAGTAAAGGAGGCAGAAAAAATATCATTGCTGGTTGAACATAGTGATTCAATGTTGCAGCTAGCAAAAGACATATATGAACAATGTTCTCGTGGTGAAATTATCCTTTTGGCTTAA 1518 0.4229 MYVCTLYLDALSLYIINKSFSISLQIIYDTIYRADRDASKWLSGPHRHICILTLLLYHNPKSESRSDSVYLPRDESFGHLKSLDFLVYILKSASQNVIPQLQSALRLQFNQPEFTSFDDLRGLYDGGIKLPTDALGKLPIPLFNELFRTDGEQVLKFPPPKVIQVVDQSAWMTDEEFAREMMLEFPPKSKLDSQLYGDNTSTITGEHLEPNLGGLTVEQKQKWTQDEEDALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSNGSQGSKDKPRVPKLKALPAPPSATTSSTTTTPKNAASALQNAQSDVAVPYSSLNDQDVKNPPRYNAMVFEALSALKDNNGSDLNAIVTFIEQKHQVPQNFRRALSTRLRRLVSQGKLEKLQNCYKIKKDVPSGTKSPLPRPKHVRPAPSQPQPQWQSSASVFTASNETIKEAADTAAYRIADAESKSYLAAEAVKEAEKISLLVEHSDSMLQLAKDIYEQCSRGEIILLA 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00333 505 SUPERFAMILY "Winged helix" DNA-binding domain 335 413 IPR036390 -
Phco1g00333 505 PRINTS Plant lipoxygenase signature 155 171 IPR001246 GO:0016491
Phco1g00333 505 PRINTS Plant lipoxygenase signature 111 132 IPR001246 GO:0016491
Phco1g00333 505 Pfam linker histone H1 and H5 family 337 396 IPR005818 GO:0000786|GO:0003677|GO:0006334
Phco1g00333 505 Gene3D - 170 226 - -
Phco1g00333 505 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 6 219 IPR013819 GO:0016702|GO:0046872
Phco1g00333 505 Pfam Lipoxygenase 59 220 IPR013819 GO:0016702|GO:0046872
Phco1g00333 505 PANTHER SINGLE MYB HISTONE 4 219 504 IPR044597 GO:0003691
Phco1g00333 505 Gene3D - 227 299 - -
Phco1g00333 505 SUPERFAMILY Homeodomain-like 220 273 IPR009057 -
Phco1g00333 505 MobiDBLite consensus disorder prediction 273 315 - -
Phco1g00333 505 ProSiteProfiles Myb-like domain profile. 219 272 IPR001005 -
Phco1g00333 505 SUPERFAMILY Lipoxigenase 51 220 IPR036226 -
Phco1g00333 505 SMART sant 219 274 IPR001005 -
Phco1g00333 505 MobiDBLite consensus disorder prediction 403 434 - -
Phco1g00333 505 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 219 277 IPR017930 -
Phco1g00333 505 SMART h15plus2 333 398 IPR005818 GO:0000786|GO:0003677|GO:0006334
Phco1g00333 505 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 335 403 IPR005818 GO:0000786|GO:0003677|GO:0006334
Phco1g00333 505 Gene3D - 81 169 IPR027433 -
Phco1g00333 505 FunFam Telomere repeat-binding factor 1 217 273 - -
Phco1g00333 505 MobiDBLite consensus disorder prediction 295 315 - -
Phco1g00333 505 FunFam Telomere repeat-binding factor 1 223 302 - -
Phco1g00333 505 CDD SANT_TRF 221 271 - -
Phco1g00333 505 CDD H15 337 394 IPR005818 GO:0000786|GO:0003677|GO:0006334
Phco1g00333 505 Gene3D - 332 418 IPR036388 -
Phco1g00333 505 Pfam Myb-like DNA-binding domain 220 271 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00333 Phco-Chr1 2475766 2489568 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Phco1g00333 Lipoxygenase 6.6e-33 No_clan