Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00332 ATGGGGAATCAGAAGCAGAAGTGGACGCAGGACGAAGAAGACGCGCTCATCGCCGGAGTTGAAAAGCACGGTCCCGGAAAGTGGAAGAACATTCTCAAAGACCCCCAATTCGCCCCTTTTCTCACTTCCCGTTCCAACATCGACCTCAAGGACAAATGGCGGAATTTGAGCGTCAGTAACGGTTCTCAAGGCTCTAAAGACAAACCTAGGGTTCCTAAGCTCAAGGCTCTTCCTGCTCCTCCTTCTGCTACCACCTCCTCCACCACCACCGCCACCTCTCAAAACGCCGCTCCTGCTCCTCAAAAGGGACCTTCTGATGTCCCTGTCCCTGATTCTTCTCCCAATGACCAAGATGTCAAAAACCCTCCGAGGTATAATGCAATGGTTTTTGAAGCTCTATCAGCACTAAAAGATAATAATGGATCTGACCTAAATGCCATTGTTACATTCATCGAGCAAAAACATCAGGTTCCTCAAAATTTTAGAAGGGCATTAAGTACAAGGTTGAGGAGGCTTGTTAGTCAAGGGAAACTTGAAAAGGTACAAAATTGTTACAAAATAAAAAAAGATGTCTCCTCAGGGACAAAATCACCTCCACCAAAACCAAAGGATGTTCGGCCACTGCAGCTACAACCACAACGGCAACCTCCAACTTCTGTCTTTACGGCATCTAACGCGACAGTAAAGGAAGCTGCAGATACTGCAGCCTACAGAGTTGCTGATGCTGAAAGTAAATCATATCTGGCTGCGGAAGCAGTAAAGGAGGCAGAAAAAATATCATTGCTGGTTGAACAAAGTGATTCAATGTTGCAGCTAGCAAAAGACATATATGAACAATGTTCCCGGGGTGAAATTATCCTCTTGGCCTAA 870 0.4586 MGNQKQKWTQDEEDALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSNGSQGSKDKPRVPKLKALPAPPSATTSSTTTATSQNAAPAPQKGPSDVPVPDSSPNDQDVKNPPRYNAMVFEALSALKDNNGSDLNAIVTFIEQKHQVPQNFRRALSTRLRRLVSQGKLEKVQNCYKIKKDVSSGTKSPPPKPKDVRPLQLQPQRQPPTSVFTASNATVKEAADTAAYRVADAESKSYLAAEAVKEAEKISLLVEQSDSMLQLAKDIYEQCSRGEIILLA 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00332 289 FunFam Telomere repeat-binding factor 1 2 58 - -
Phco1g00332 289 Gene3D - 2 58 - -
Phco1g00332 289 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Phco1g00332 289 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Phco1g00332 289 SMART h15plus2 119 184 IPR005818 GO:0000786|GO:0003677|GO:0006334
Phco1g00332 289 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 121 189 IPR005818 GO:0000786|GO:0003677|GO:0006334
Phco1g00332 289 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Phco1g00332 289 MobiDBLite consensus disorder prediction 80 100 - -
Phco1g00332 289 MobiDBLite consensus disorder prediction 189 220 - -
Phco1g00332 289 FunFam Telomere repeat-binding factor 1 8 87 - -
Phco1g00332 289 MobiDBLite consensus disorder prediction 53 122 - -
Phco1g00332 289 SUPERFAMILY "Winged helix" DNA-binding domain 121 201 IPR036390 -
Phco1g00332 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 62 IPR017930 -
Phco1g00332 289 SMART sant 4 59 IPR001005 -
Phco1g00332 289 CDD H15 123 207 IPR005818 GO:0000786|GO:0003677|GO:0006334
Phco1g00332 289 PANTHER SINGLE MYB HISTONE 4 1 288 IPR044597 GO:0003691
Phco1g00332 289 Pfam linker histone H1 and H5 family 123 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Phco1g00332 289 CDD SANT_TRF 6 56 - -
Phco1g00332 289 Gene3D - 118 206 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00332 Phco-Chr1 2460686 2463436 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Phco1g00332 Linker_histone 2.6e-12 CL0123