Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00328 ATGGAAACTCGAGTTGGGAACAAGTTCCGTCTCGGTCGGAAAATTGGCAGCGGATCCTTCGGGGAGATCTATCTCGGAACTAATTTTCAGACGAATGAAGAGGTTGCGATTAAGCTTGAAAGTGTCAAAACCAAGCACCCTCAACTGTTGTATGAATCTAAGCTGTATAAAATACTGCAAGGAGGAAATGGGATTCCAAATGTGAAATGGTACGGTGTTGAAGGAGAGTACAATATCCTCGTGATGGATTTACTTGGCCCTAGTCTTGAGGATTTGTTCAACTTCTGTAGTCGGAAATTGTCTCTCAAAACTGTTCTTATGCTTGCTGATCAGATGATAAATCGAGTTGAATTTGTTCATTCCAAATCATTTTTACATCGCGACATCAAGCCAGACAACTTCCTCATGGGTTTAGGGAGGCGTGCAAATCAAGTGTATATCATTGACTTTGGCCTTGCTAAGAAATATAGAGACACCACTACACATCAGCATATCCCTTACAGAGAGAACAAGAATTTGACAGGAACTGCTAGGTATGCTAGTATGAATACTCATCTAGGAATTGAGCAAAGCCGCAGGGATGATTTAGAGTCACTTGGATATGTTCTTATGTACTTTTTAAGAGGAAGTCTGCCTTGGCAGGGATTGAAAGCTGGTACTAAGAAGCAGAAGTACGAGAAGATTAGTGAGAAGAAAGTTTCTACTTCTATTGAGTCTCTCTGTCGTGGCTATCCCTCAGAATTTGCTTCATATTTCCATTACTGCCGGTCACTGAGGTTTGATGACAGACCAGATTATGCTTATTTGAAAAGACTTCTGCGTGACCTTTTCATTCGTGAAGGGTTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAATCTCAAAGTGCCGCTGCCCCTGCCCGTGCCATTGGTCCTCCTGCTGCTGGACCAAGTTCAGGCGTGCCACCACTGTCTGCAAATGCTGATGGACAGTTAGGTGGAGAGGATGGTAGGCATAATAATTGGTCTTCATCAGATCCTACTCGTAGGAGAAACCCTGTACCTTTTGCTAATGATGGAGTGTTATCGAGGCAAAAGAGCCCAGTTACATATGACTCAACTCTATCTAAAGATGTTACGTTGTCAAGTTCTAATTTTTTCCGGCCAAGTGGATCTGCAAGGCGAGGTGCTGTCTCAGGCAGCCGAGAATCCCGTGATGTGGTTGTTGGCAGTGAGACTGAGGTTTCTCGTCCTCTGGATTCAAGTCAGGGAGCACTTCGTAAAATGTCTGTCCCTGGTGGTCAGAGAAGTTCAGCGATCACGTCGTCTGAGCAGAACCGTACATCCTCTGGCAGAAACACATCGAACATAAAGAATTTGGAGACAACTCTTAGGGGTATTGAGAGCCTACATTTCAATGAAGAGAGGGTACATTATTAG 1434 0.4358 METRVGNKFRLGRKIGSGSFGEIYLGTNFQTNEEVAIKLESVKTKHPQLLYESKLYKILQGGNGIPNVKWYGVEGEYNILVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTTTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIESLCRGYPSEFASYFHYCRSLRFDDRPDYAYLKRLLRDLFIREGFQFDYVFDWTILKYQQSQSAAAPARAIGPPAAGPSSGVPPLSANADGQLGGEDGRHNNWSSSDPTRRRNPVPFANDGVLSRQKSPVTYDSTLSKDVTLSSSNFFRPSGSARRGAVSGSRESRDVVVGSETEVSRPLDSSQGALRKMSVPGGQRSSAITSSEQNRTSSGRNTSNIKNLETTLRGIESLHFNEERVHY 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00328 477 FunFam Putative Casein kinase I 1 85 - -
Phco1g00328 477 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Phco1g00328 477 FunFam Casein kinase I isoform delta-like 1 308 - -
Phco1g00328 477 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g00328 477 CDD STKc_CK1_delta_epsilon 8 282 - -
Phco1g00328 477 MobiDBLite consensus disorder prediction 306 367 - -
Phco1g00328 477 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Phco1g00328 477 MobiDBLite consensus disorder prediction 335 349 - -
Phco1g00328 477 Gene3D Transferase(Phosphotransferase) domain 1 1 308 - -
Phco1g00328 477 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Phco1g00328 477 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g00328 477 MobiDBLite consensus disorder prediction 380 454 - -
Phco1g00328 477 PANTHER CASEIN KINASE-RELATED 8 411 - -
Phco1g00328 477 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g00328 477 MobiDBLite consensus disorder prediction 432 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00328 Phco-Chr1 2442689 2446262 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Phco1g00328 Pkinase 8.5e-27 CL0016