Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00324 ATGACTTACTTCGGGATTAACATAGCGGATTTCTCATGGACTTGTCTGAGAGATTTTGATTTCACTTCTTTGTGCTCCCAAACGAGCATAATAGACATTTTAAAATTACTTTTCATGGGTGTCTTCTACACGTCTTTGCTTATTTCATTAATCAGAGGAAGTTCTGCATGTGGTAGCAACAGAAAAAACTGGGTTTTCCTAGTTGTCTCAGTCTGTTGTGCTCTCATTAGCATTGCACATTTTAGCAATGGCCTGAGGTTGTGGAATCAGAAGAGCTGGTTAGCTTGTATTTTCAGAGCATTTGTGTGGCTTTCTTTTACAGTTTCATTGCATGTTCAGAGAAACAAATGGATCAAAATTCTAAACTCTATCTGGTGGACATCTTCCTGTGTACTTGCTTCTGCTCTCAACATTGAAATCATGTTCAAAGAGTACACAATTGGACTGTTTGAAATGCTACAATGGCTTGTACATTTCTTACTTTTCTTTTGTTCCTTCCAAAATCTCGGTTATTTTGTTGCATCCCAAAGTAACCAAGAAGACAATACAAGTTTATCTGAGCCTCTGATTGCTCAGAAAGTTGAAACTTCACAAACACAACTAGGGCGTGCTACCCTTCTGAGTAAGTTGACTTTCTCCTGGGTTAATTCTTTACTCAGACTGGGTTACTCAAAGCTACTAGCTCTTGAAGATATCCCATTTCTTCTTCCTGAAGATGAAGCGAACTTGGCCTACCAAGCTTTTATGCATGCATGGGAACCCCTTGTAAGGGAGAGCAGCAATAACAAGAACAAAAACTTGGTTCTTTGGTCTGTAGCTAGAACCTTCTCCAAGGAGAACATATTAATAGCATTTTATGCACTACTCAGAAGTATTTGCATGATAATTTCTCCTCTAATACTATATGCTTTTGTGAACTACACAAATAACACTGAGGCAGATCTCAAAAAAGGTTTTTCCATACTGGGTTTTATGGTTCTCAGCAAAGTGGTTGAGTCTCTGTGTCAGAGACATTACAGTTTTGGCTCAAGGAGATCAGGAATGAAAATTAGATCAGCTCTGATGGTGGCAGTGTATCAGAAACTGCTAAAGCTTTCCAGCTCAGCAAGGACAAGGCACTCAACTGGAGAAGTTATGAATTACATTGCAGTTGATGCATATCGATTGGGAGAATTTCCATGGTGGTTTCATATAACATGGACTTCCGCAGTTCAACTTGTTTTGTCCATCATTATCCTTTTTAGTGTTGTTGGTGCTGGTGCTCTTCCAGGTTTAGTCCCTCTTCTCATCTGTGGACTTCTGAATGTACCATTTGCACAGATCATACACAATTGTCAGTCACAATTCATGATGGCACAAGATGAGCGTCTCAGATCAACTTCAGAAATTCTAAATAGTATGAAAATCATCAAGTTACAATCCTGGGAAGATAAATTCAAGAACATAGTTTTGTCCCTACGTGCTAAAGAATTCAAATGGTTGACTAAGGTACAGATCATAAAAGCTAATGGGGCATTTCTATATTGGATGAATCCGACCATTGTTCCTACTGTTGTCTTCCTCGGCTGTGCTCTTTTCAAAAGTGCCCCACTGAATGCTGGGACCATTTTCACAGTTATTACAACATTGAGGATAATGGGAGAACCTGTTCGAATGATCCCAGAGGCTCTATCTATTATGATCCAAGTTAAGGTCTCCTTTGATCGTCTCAATACCTTTTTGCTTGATGAAGAGATAAATAGTATTAATGGTTATGGAAGAAATATAAAGCAGAGTTCAGTTAATGCAGTGGAAATCCAGGAAGGCAACTTCATTTGGGATCATGAATCAGTGTCCCCAACTTTAAGAGAGGTGAAGTTAGAAATCAAGTGGGGACAGAAAATTGCAGTTTGTGGACCAGTTGGAGCTGGAAAATCATCTCTTTTGTATGCAGTACTTGGAGAAATTCCCAAGATCTCAGGAACTGTTAATGTTGGTGGTACCATAGCCTATGTTTCTCAAACTTCTTGGATACAAAGTGGGACAGTTCGGGATAATATACTTTTTGGAAAGCCAATGAACAAAACCAGATATGAGACTGCCACTAAAGTTTGTGCCTTAGATATGGATATTAATGATTTTAGCCATGGTGATCTTACCGAAATAGGCCAGCGAGGCATTAACATGAGTGGAGGACAAAGGCAAAGGATTCAACTAGCTCGAGCAGTTTATAATGATGCTGACATCTATCTCCTTGATGACCCATTCAGTGCAGTTGATGCACAAACAGCTGCTATTCTGTTCCATGACTGTGTCATGACTGCTTTAAGAGAGAAAACAGTCATTCTTGTGACTCATCAAGTGGAGTTTCTCTCAGAAGTTGATACGATCCTGGTAATGGAGGATGGAAAAGTTACTCAATCAGGAAGTTATGAAGATCTCCAGTCAGCTGGCACTGCCTTTGAACAGCTTGTGAGTGCCCATAAAGCTGCATTAACAGGATTGGATCAAAAATATGAAAATAGTAGTGATTCTGATATTGAATTTATAGTACATCCTGAAGAATCTCAAAGTTTTAATCTCACTAAAAATCAAAGTGAGCAGGTGATTTCTACCAAGGGACAACTTGGGGCACAACTTACACAAGAAGAAGAAAAAGTGATTGGTGATGTTGGGTGGAAACAATTCTGGGACTATATTTCATTTTCCAGGAGTTCATTCCTGTTTTGTTTAACCATGTTAGCAGAATTTGCTTTTATTGCTTTGCAGACTGCATCATCGTATTGGCTTGCTCTAGCTATTGAAATTCCAAAAGTAACCAGTGGCATTTTGATAGGAGTATACGCATCATTTTCATTTCTTGGTGCTATATTTATATATATAAGGTCTTTCCTAGCTGCTAATCTTGGATTAAAAGCTTCTGAAGCCTTCTTCTCAAGTTTCACATCAGCTATGTTCAATGCTCCGATGTTGTTCTTTGACTCAACCCCTGTAGGAAGGATTTTAACCCGAGCTTCCTCAGATTTAAGTATTTTGGACATTGATATTCCTTATTCTCTCACTATAGTATCATTTATAGCAGCTGAAATTCTAGTGACAATATGTGCAATGGTATCAATCACATGGCAAGTTCTTATTGTTGCTGTTCCGGCTACAGTGGCATCAATATACATTCAGGGATATTATCAAGCCTCTTCAAGGGAATTGATGAGGATAAATGGAACCACAAAAGCTCCTGTCATGAATTTTGCTGCCGAGACATCACTTGGAGTGGTTACTGTAAGAGCATTGAACATGGTGAACAGATTTTTCAACAACTACCTAAAGCTTGTGGACATGGATGCAGCAGTGTTCTTTCACTCTAATGTGGCCACGGAGTGGTCAATTTTAAGGATTGAAATACTTCAAAACTTGACAGTAGTCACAGCAGCTTTATTACTTATTCTACTTCCCAGGGGATCTGTATCATCGGGTCTTGTGGGATTGTCTCTTTCTTATGCATTGACACTGAAAGAATCCCAAGTATTTTGGAGTAGGATGTTTAGCATGTTGTCAGACCATATCATCTCTGTTGAAAGAATCAAGCAATTCATTCACATACCATCAGAGCCTCCTGCCATTGTGGAGGATAACAGACCTCCATCTTCATGGCCATCCAAGGGTAGGATCGATCTTCGAGCGCTAGAGATTAGATATCGTCCAAATGCTCAATTAGTTCTCAAGGGTATAAATTGTACGTTTGTAGAAGGGAGTAGAGTGGGAGTTGTTGGAAGGACTGGAAGTGGCAAAACTACACTTATAAGTGCTTTGTTTCGCTTAGTTGAACCTTCAAGAGGTGATATTCTAATAGATGGGATCAACATATGCTTGATGGGGTTAAAGGATTTGAGAACGAAACTAAGCATCATCCCTCAAGAACCAACTCTTTTCAAGGGCAGCATTAGGACCAACTTGGACCCTCTAGGCTTCTATGAAGATGATGAAATATGGAAGGCTTTAGAGAAATGTCAGCTAAAGGAAACAATCGGCAAGCTACCAGGTCTCTTGGACTCTTCTGTGAGTGACGAAGGTGGAAATTGGAGCTTGGGACAGCGCCAACTGTTTTGCCTTGGTAGAGTACTACTTAAGAGGAACAGAATACTGGTCCTAGATGAAGCTACTGCGTCCATTGACTCTGCAACAGATGCCATTCTACAACAAGTGATAAGACAAGAATTTGCAGAATGCACAGTCATAACTGTGGCTCACAGAGTTCCAACTGTAATAGATAGTGACATGGTCATGGTCCTGTCTCATGGGAAACTAGTGGAATATGACGAGCCTTCGAAACTTATGGGGACCAACTCTTGGTTCTCTAATTTAGTTGCTGAATATTGGTCAAGCTGCAGGAAGAACTCATCGCCAAATATTAGCAGGAAGCAACATTGA 4407 0.3975 MTYFGINIADFSWTCLRDFDFTSLCSQTSIIDILKLLFMGVFYTSLLISLIRGSSACGSNRKNWVFLVVSVCCALISIAHFSNGLRLWNQKSWLACIFRAFVWLSFTVSLHVQRNKWIKILNSIWWTSSCVLASALNIEIMFKEYTIGLFEMLQWLVHFLLFFCSFQNLGYFVASQSNQEDNTSLSEPLIAQKVETSQTQLGRATLLSKLTFSWVNSLLRLGYSKLLALEDIPFLLPEDEANLAYQAFMHAWEPLVRESSNNKNKNLVLWSVARTFSKENILIAFYALLRSICMIISPLILYAFVNYTNNTEADLKKGFSILGFMVLSKVVESLCQRHYSFGSRRSGMKIRSALMVAVYQKLLKLSSSARTRHSTGEVMNYIAVDAYRLGEFPWWFHITWTSAVQLVLSIIILFSVVGAGALPGLVPLLICGLLNVPFAQIIHNCQSQFMMAQDERLRSTSEILNSMKIIKLQSWEDKFKNIVLSLRAKEFKWLTKVQIIKANGAFLYWMNPTIVPTVVFLGCALFKSAPLNAGTIFTVITTLRIMGEPVRMIPEALSIMIQVKVSFDRLNTFLLDEEINSINGYGRNIKQSSVNAVEIQEGNFIWDHESVSPTLREVKLEIKWGQKIAVCGPVGAGKSSLLYAVLGEIPKISGTVNVGGTIAYVSQTSWIQSGTVRDNILFGKPMNKTRYETATKVCALDMDINDFSHGDLTEIGQRGINMSGGQRQRIQLARAVYNDADIYLLDDPFSAVDAQTAAILFHDCVMTALREKTVILVTHQVEFLSEVDTILVMEDGKVTQSGSYEDLQSAGTAFEQLVSAHKAALTGLDQKYENSSDSDIEFIVHPEESQSFNLTKNQSEQVISTKGQLGAQLTQEEEKVIGDVGWKQFWDYISFSRSSFLFCLTMLAEFAFIALQTASSYWLALAIEIPKVTSGILIGVYASFSFLGAIFIYIRSFLAANLGLKASEAFFSSFTSAMFNAPMLFFDSTPVGRILTRASSDLSILDIDIPYSLTIVSFIAAEILVTICAMVSITWQVLIVAVPATVASIYIQGYYQASSRELMRINGTTKAPVMNFAAETSLGVVTVRALNMVNRFFNNYLKLVDMDAAVFFHSNVATEWSILRIEILQNLTVVTAALLLILLPRGSVSSGLVGLSLSYALTLKESQVFWSRMFSMLSDHIISVERIKQFIHIPSEPPAIVEDNRPPSSWPSKGRIDLRALEIRYRPNAQLVLKGINCTFVEGSRVGVVGRTGSGKTTLISALFRLVEPSRGDILIDGINICLMGLKDLRTKLSIIPQEPTLFKGSIRTNLDPLGFYEDDEIWKALEKCQLKETIGKLPGLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQQVIRQEFAECTVITVAHRVPTVIDSDMVMVLSHGKLVEYDEPSKLMGTNSWFSNLVAEYWSSCRKNSSPNISRKQH 1468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00324 1468 CDD ABC_6TM_ABCC_D2 900 1191 IPR044726 GO:0140359
Phco1g00324 1468 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 281 562 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Phco1g00324 1468 CDD ABCC_MRP_domain2 1214 1434 - -
Phco1g00324 1468 Gene3D ABC transporter type 1, transmembrane domain 268 570 IPR036640 GO:0005524|GO:0016020
Phco1g00324 1468 Gene3D - 1199 1449 IPR027417 -
Phco1g00324 1468 Gene3D ABC transporter type 1, transmembrane domain 866 1197 IPR036640 GO:0005524|GO:0016020
Phco1g00324 1468 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 599 820 IPR003439 GO:0005524
Phco1g00324 1468 SUPERFAMILY ABC transporter transmembrane region 889 1198 IPR036640 GO:0005524|GO:0016020
Phco1g00324 1468 Gene3D - 571 841 IPR027417 -
Phco1g00324 1468 FunFam Multidrug resistance protein associated1 575 840 - -
Phco1g00324 1468 ProSitePatterns ABC transporters family signature. 722 736 IPR017871 GO:0005524|GO:0016887
Phco1g00324 1468 Pfam ABC transporter transmembrane region 281 547 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Phco1g00324 1468 Pfam ABC transporter transmembrane region 901 1162 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Phco1g00324 1468 SUPERFAMILY ABC transporter transmembrane region 269 574 IPR036640 GO:0005524|GO:0016020
Phco1g00324 1468 CDD ABCC_MRP_domain1 597 797 - -
Phco1g00324 1468 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 203 1452 - -
Phco1g00324 1468 FunFam ABC transporter C family member 5 865 1197 - -
Phco1g00324 1468 FunFam ABC transporter C family member 3 1199 1450 - -
Phco1g00324 1468 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 904 1163 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Phco1g00324 1468 CDD ABC_6TM_ABCC_D1 282 570 IPR044746 GO:0140359
Phco1g00324 1468 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1218 1450 IPR003439 GO:0005524
Phco1g00324 1468 Pfam ABC transporter 1233 1381 IPR003439 GO:0005524
Phco1g00324 1468 SMART AAA_5 624 797 IPR003593 GO:0016887
Phco1g00324 1468 SMART AAA_5 1242 1434 IPR003593 GO:0016887
Phco1g00324 1468 FunFam ABC transporter C family member 10 264 578 - -
Phco1g00324 1468 Pfam ABC transporter 615 749 IPR003439 GO:0005524
Phco1g00324 1468 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 595 819 IPR027417 -
Phco1g00324 1468 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1206 1449 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00324 Phco-Chr1 2402055 2409080 Dispersed/Transposed