Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00318 ATGGGGCACCACTCTTGCTGCAACAAGCAGAAGGTCAAAAGAGGGCTTTGGTCCCCCGAAGAGGATGAAAAACTCATCAACTACATCACAACTTATGGACATGGTTGCTGGAGTTCTGTCCCAAAACTTGCAGGCCTTCAAAGGTGTGGAAAGAGTTGCAGATTAAGATGGATAAATTATCTGAGACCTGATTTGAAACGTGGAAGTTTCTCTCCTCAAGAAGCAGCTCTCATTATTGAACTCCACAGCATTTTAGGGAACAGGTGGGCTCAGATAGCCAAGCACCTACCTGGAAGAACAGATAATGAGGTGAAAAACTTTTGGAATTCAAGCATAAAGAAGAAACTCCTTTCTCATGATGCTATTCCTCCTTTAGCCACATTTTCTGATTTTCACAACCCCAGCAGTATTGGTTCCATGGAAAGTTTCTTCCCTTTTACTGCAAACCCTAATGTGATCTTAAACTTTCACCATTACACAGACCAGCTCTTCCTTCCCACTACACCATCCCCAGTCCTACAAGGTTTTGATCATAGTAATGATATTAAGTTAGGCATCAACAATTACAATGCCAATTTCCTTCATATTCAGAATCCAGTACCAGAAACAACACTACCATCTTCCAATCCATCATCTTATGAAGACATATGGCCATTGGGTTGTGTAGCTCTACATCTCAATCCAAATGAAGAAAATCAAATCACCAAAAATGACACCACCTCAGACTATGTTCTAGACAAATTCATCAACCCAACAGCATTGCAGCAACATGAATGTCACTTGGTAGAACCCCTTGTGCCAAAAGTCAGTGAGAACATTGAGGATTATGTCTGTAGCATCCCATTCTCATCTCCCCAGGAACAACATGAAGCTACAGCAAAATTTGAGGGTTATCCACAAGATTTAACTGTGGCAGTTAACCAATTAGAGTACATTGATGCCTTCATGTCATTGTTGCCATCTTCAACAACTTCATCATCAGTATCAAGCACCCAAAAAGTCCCATACCCTATTATTCCTTCAGGATGGGAACCTTAA 1038 0.4114 MGHHSCCNKQKVKRGLWSPEEDEKLINYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLLSHDAIPPLATFSDFHNPSSIGSMESFFPFTANPNVILNFHHYTDQLFLPTTPSPVLQGFDHSNDIKLGINNYNANFLHIQNPVPETTLPSSNPSSYEDIWPLGCVALHLNPNEENQITKNDTTSDYVLDKFINPTALQQHECHLVEPLVPKVSENIEDYVCSIPFSSPQEQHEATAKFEGYPQDLTVAVNQLEYIDAFMSLLPSSTTSSSVSSTQKVPYPIIPSGWEP 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00318 345 SMART sant 66 114 IPR001005 -
Phco1g00318 345 SMART sant 13 63 IPR001005 -
Phco1g00318 345 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Phco1g00318 345 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Phco1g00318 345 Gene3D - 69 116 - -
Phco1g00318 345 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Phco1g00318 345 FunFam Myb transcription factor 69 116 - -
Phco1g00318 345 CDD SANT 17 61 IPR001005 -
Phco1g00318 345 FunFam MYB transcription factor 6 66 - -
Phco1g00318 345 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Phco1g00318 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Phco1g00318 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Phco1g00318 345 Gene3D - 11 67 - -
Phco1g00318 345 PANTHER MYB DOMAIN PROTEIN 55 1 147 - -
Phco1g00318 345 CDD SANT 69 109 IPR001005 -
Phco1g00318 345 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00318 Phco-Chr1 2346980 2348292 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco1g00318 Myb_DNA-binding 1.3e-14 CL0123