Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00311 ATGGAGATGAAGGGTTTTGTATTCAACCAACAGCAACAACAGCCAGTAGTGGAGGAGAACATGTCAAACTTGACTTCTGCATCTGGTGAAGCTAGTGCTTCCTCTGGCAACAGAACTGAAATTGGAACCAATTACCCTCAACAACACTTGGCTCCACCACCAACTCAGACTCAGCCAGCAAAGAAAAAGAGAAACCTCCCTGGTAACCCAGATCCTGATGCTGAAGTTATAGCCATGTCCCCCAAGAGTCTTCTGGCCACAAATAGGTTCACTTGTGAGATCTGCAACAAAGGATTTCAAAGAGACCAGAACCTCCAACTTCACAGAAGAGGGCATAATTTGCCTTGGAAGCTGAAGCAGAGGACAAGCAAAGAGGTGAAGAAGAAGGTGTATGTGTGTCCAGAGCCAAATTGTGTGCATCATGATCCATCAAGGGCTCTGGGGGACCTAACTGGGATCAAGAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCCAAGAAATATGCTGTTCAATCAGATTGGAAAGCCCATTCCAAGACCTGTGGCACAAGGGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTCATAACCCACAGAGCTTTCTGTGATGCATTAGCAGAGGAGAGTGCAAGAGCAATTACGGGCACAGCCAATAACCAACCTCTTCCCCCACAACCTTCTTCCTCTCATCACCACCACCACATGAGCCTCCAAACCCAGTTCAACCCTCAAAATCTCCATGCCTTCTCAATGAAAAAAGAGCAGCAAGGTTTCAATGTTAGACCAGAAGTGCCCCCTTGGCTGGCCCCACCAACAACAGTTGATCAGCTATCCTCATCCCCATCCATAATGTTCTCTCCTCCTCCACACCGAGAAAACCCTAACCCTAGTCTTGGTCCCACTCTTGCTGCCTACCAATCAGTCCCTAGCGCTTCCCCACACATGTCAGCCACAGCATTGCTGCAGAAAGCAGCTCAGATGGGTGCAACCATGAGCAGAAGTGGTTCCTCACCAGCTATGGCAAGGGCCCACCATCAGGCTCACATGACCTCTTCTGCAGATTCTGGCACTGCTCACTTTGGCTTGAACTTGTCCTCACGTGAAGACACCACCACCACCACCACTTCAACAACAACAACAACCACTGTTACTACTAACACTGCTACAGTGTTTAGCCATGGCTTATTATCATCATCACCTTTGGGGAATAAAGCTGCTACTGCTGCGTCTTCTGCTCCATCCCTTCTTCATGATGTTATCAACTCTTTCTCTTCTCCTTCTGCCTTCGAAGGAACCCCTTTTGAGGATGCATTTGGTGTCATTCAGAGTTCAAAGAAACTAGATGAAGATGATCATAGCTTGTATTTGCATGACACCTTCTCAAAAACAAGTGGTGCAGCTGGAAATGAAGGGTTGACCAGAGATTTCTTGGGTCTTAGGCCCCTCTCTCATACTGATATTCTCACCATTGCTGGCATTGGAAACTGCATTCATGATCACCAAAACCAATCTCAAAAGCCATGGCAAGGTTAG 1569 0.4748 MEMKGFVFNQQQQQPVVEENMSNLTSASGEASASSGNRTEIGTNYPQQHLAPPPTQTQPAKKKRNLPGNPDPDAEVIAMSPKSLLATNRFTCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVKKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAITGTANNQPLPPQPSSSHHHHHMSLQTQFNPQNLHAFSMKKEQQGFNVRPEVPPWLAPPTTVDQLSSSPSIMFSPPPHRENPNPSLGPTLAAYQSVPSASPHMSATALLQKAAQMGATMSRSGSSPAMARAHHQAHMTSSADSGTAHFGLNLSSREDTTTTTTSTTTTTTVTTNTATVFSHGLLSSSPLGNKAATAASSAPSLLHDVINSFSSPSAFEGTPFEDAFGVIQSSKKLDEDDHSLYLHDTFSKTSGAAGNEGLTRDFLGLRPLSHTDILTIAGIGNCIHDHQNQSQKPWQG 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00311 522 MobiDBLite consensus disorder prediction 356 392 - -
Phco1g00311 522 MobiDBLite consensus disorder prediction 1 73 - -
Phco1g00311 522 SMART c2h2final6 166 186 IPR013087 -
Phco1g00311 522 SMART c2h2final6 90 112 IPR013087 -
Phco1g00311 522 SMART c2h2final6 131 161 IPR013087 -
Phco1g00311 522 MobiDBLite consensus disorder prediction 1 63 - -
Phco1g00311 522 SUPERFAMILY beta-beta-alpha zinc fingers 89 186 IPR036236 -
Phco1g00311 522 Gene3D Classic Zinc Finger 144 224 - -
Phco1g00311 522 Gene3D Classic Zinc Finger 71 137 - -
Phco1g00311 522 MobiDBLite consensus disorder prediction 228 249 - -
Phco1g00311 522 FunFam protein indeterminate-domain 12-like 69 137 - -
Phco1g00311 522 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 112 IPR013087 -
Phco1g00311 522 FunFam protein indeterminate-domain 5, chloroplastic-like 144 223 - -
Phco1g00311 522 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Phco1g00311 522 MobiDBLite consensus disorder prediction 360 392 - -
Phco1g00311 522 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 36 498 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00311 Phco-Chr1 2277889 2280063 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco1g00311 None None None