Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00307 ATGCAGCCGAAATCCCGTTTTTTTGTTCCTCCCCAAAAGGCCGTGAACAACAATAACAACAACACCACCACCAACACCAACACCAACAACAGAATCTCAACAACAAGAAATGGCAACAGCACCACCCAGGCTTGCGCTGCATGCAAGCACCAACGCAGAAAGTGTGCACCTGACTGCATTCTCGCACCTTATTTCCCTCATGATCGACAGCGCCAGTTTCTCAACGCTCACAAGTTGTTTGGTGTAAGCAACATCACCAAAATCATCAAGGTTGTGAGCCCTCACGACAAGGACCAAGCCGTGCGCACCATCATCTACCAATCTGACATGCGTGCCACAGACCCTGTTGGAGGCTGCTATAGGTACATTCTCGACCTTCAGGCTCAGATTGAGTACTGCCGAGCCGAGCTAGAACTCGTCCTTCAACAACTCGCCATTTTTCGAGCTCAGGCTCAGCACCAGAATCAGCATCAGTATCAGCACCAGCACGGTATCTATGCTCCGAACAATGTTAACGTCACTGTCAATGGAGATGGTGAGGTTTTGAACGCTGATCCCATGGGGTTGTATAACCAGCAACAGTATCAGTGTCTGCAGCCACACCAACAGGAGCAGTATGTTATGATGCACGAAAATGGGAGCCAAAACTGCAACGGCGCCACTCCTTTGCAGGAACAGATCAACACATGGGCTGTTCAGAACACTGCTGTGTCGCTTTCTTCCTTGTCGTTGCAAGGGCAGAGTAGTAATGTTAGTGATGAATATGATCACAAGCCCGTCATTGACATAGATTCTGATGAGAGAAGTGAGTTAGGGTTCGAGTCTGAAGAATTAGTCCATCGCAGTGATGAAGCAGTGCTGTTTAAGATAGATGATGCAGTAATAAAAGCTGAGGGTGACTGCATGCAACAAGCTCAAGACCATGACCTGAAAGGTGCAGCAACATCGTTTAGCCTCACAAACTGTACTTGCTGA 975 0.4821 MQPKSRFFVPPQKAVNNNNNNTTTNTNTNNRISTTRNGNSTTQACAACKHQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKVVSPHDKDQAVRTIIYQSDMRATDPVGGCYRYILDLQAQIEYCRAELELVLQQLAIFRAQAQHQNQHQYQHQHGIYAPNNVNVTVNGDGEVLNADPMGLYNQQQYQCLQPHQQEQYVMMHENGSQNCNGATPLQEQINTWAVQNTAVSLSSLSLQGQSSNVSDEYDHKPVIDIDSDERSELGFESEELVHRSDEAVLFKIDDAVIKAEGDCMQQAQDHDLKGAATSFSLTNCTC 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00307 324 MobiDBLite consensus disorder prediction 11 36 - -
Phco1g00307 324 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 42 199 - -
Phco1g00307 324 ProSiteProfiles LOB domain profile. 43 144 IPR004883 -
Phco1g00307 324 MobiDBLite consensus disorder prediction 1 36 - -
Phco1g00307 324 Pfam Lateral organ boundaries (LOB) domain 44 139 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00307 Phco-Chr1 2257261 2258703 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Phco1g00307 LOB 5.1e-36 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01806 10 40424428 40425012 Phco1g00307 1 2257261 2258703 PCT