Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00305 ATGTATCGATTAGGTCGTAGAGTAGCTTCTTCCTCCGCTAAGAACCTCGTATATGGTAGGGTGTTGTCAAGCAGAAATTTTGTGAGCAAAGATATCAACTTTGGGGTTGGGGCTCGTGCTGCAATCCTCCAAGGTGTAACTCAGGTTGCTGATGCTGTGAAAGTAACCATGGGACCCAAGGGTCGCAATGTGATAATTGAGAGAAACAGTGGGAATCCCAGGATCACGAAGGATGGTGTGACTGTGGCTAAAAGTATCAAATTTAAAGACAACGCCAAAAATGTCGGTGCTGATCTAGTCAAGCAGGTGGCCAAGGCTACCAACACTGCTGCTGGAGATGGTACAACTTGTGCAACTGTTTTGACTCAGGCAATACTCACAGAAGGATGCAAATCAATTGCTGCTGGCGTAAATGTTATGGATTTACGTAGTGGAATAAATAAGGCAGTTGATGCTGTAATTACTGACTTGAAAAGCAGAGCATTGATGATAAGTACACCAGAAGAGATAACCCAGGTTGGAACTATATCTGCAAATGGGGAGCGTGATATTGGAGAATTGATAGCAAGGGCAATGGAGAAAGTTGGGAAGGAGGGAATCATTACTGTTTCTGATGGGAATACTTTGGATAACGAGTTGGAAGTGGTAGAAGGAATGAAGCTAACCAGAGGCTACATATCTCCTTATTTTATTACTGACCAGAAGACCCGCAAATGTGAATTGGAGAACCCCTTCATTCTCATCCATGACAAGAAAATTTCAGACATGAATTCACTGCTGAAAACACTGGAGCTTGCAGTAACGAAAAAAAGACCACTCCTAGTTGTTGCTGAAGATGTAGAGAGTGATGCATTGGCTATGCTTATACTCAACAAGCATCGTGCTGGGCTTAAGGTTTGTGCTGTGAAAGCTCCTGGTTTTGGGGATAGTAGAAGGGCAAATCTAGATGATCTTGCAACTCTTACTGGAGGAGAGGTCATCACTGAAGAGCGTGGTTTGTCTCTTGATAAAGTCCAACCAGAAATGCTTGGCACTGCAAAAAAGGTTACTGTCACCATTGATGACACTATTATTCTACACGGTGGTGGGGATAAGAAGGCCATTGAAGAGAGATGTGAGCAGCTAAGGACAGCTATGGAAAACAGTTCTGCCATGTTTGATAAAGAAAAAACACAGGAACGCCTATCAAAACTATCTGGCGGTGTTGCTGTTTTCAAAGTTGGAGGGGCTAGTGAGGTCGAAGTGGGGGAAAGGAAAGATAGAGTAACAGATGCTTTAAATGCCACTAGAGCTGCTGTCGAAGAGGGAATTGTTCCAGGTGGTGGAGTCGCTCTCTTATACGCTACCAAAGCCTTGGATAACCTTCAAACTCAAAATGAAGATGAAAAAAGAGGAGTACAGATTATTCAGAATGCACTCAAGGCGCCTACATTTACAATAGCTTCCAATGCTGGTTTTGATGGTGCTTTGGTCCACAGCAAATTGTTGGAACAAGATGATCTTAATTTAGGTTTTGATGCCGCTAAAGGTATCTATGTTGATATGGTAAAGGCTGGAATAATAGATCCTCTTAAAGTTGTTAGAACAGCTTTGGTAGATGCAGCCAGTGTTTCATTGCTACTGACAACAACCGAGGCAGCTGTGGTGGAGAATCCAAATGACAAAAATAAACCTCCTAGTCGGGTGCCAGATATGGATGATTTGGACCTCTAA 1713 0.4302 MYRLGRRVASSSAKNLVYGRVLSSRNFVSKDINFGVGARAAILQGVTQVADAVKVTMGPKGRNVIIERNSGNPRITKDGVTVAKSIKFKDNAKNVGADLVKQVAKATNTAAGDGTTCATVLTQAILTEGCKSIAAGVNVMDLRSGINKAVDAVITDLKSRALMISTPEEITQVGTISANGERDIGELIARAMEKVGKEGIITVSDGNTLDNELEVVEGMKLTRGYISPYFITDQKTRKCELENPFILIHDKKISDMNSLLKTLELAVTKKRPLLVVAEDVESDALAMLILNKHRAGLKVCAVKAPGFGDSRRANLDDLATLTGGEVITEERGLSLDKVQPEMLGTAKKVTVTIDDTIILHGGGDKKAIEERCEQLRTAMENSSAMFDKEKTQERLSKLSGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEGIVPGGGVALLYATKALDNLQTQNEDEKRGVQIIQNALKAPTFTIASNAGFDGALVHSKLLEQDDLNLGFDAAKGIYVDMVKAGIIDPLKVVRTALVDAASVSLLLTTTEAAVVENPNDKNKPPSRVPDMDDLDL 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00305 570 MobiDBLite consensus disorder prediction 550 570 - -
Phco1g00305 570 NCBIfam chaperonin GroEL 29 553 IPR001844 GO:0042026|GO:0140662
Phco1g00305 570 Gene3D - 32 549 IPR027413 -
Phco1g00305 570 PRINTS 60kDa chaperonin signature 53 79 IPR001844 GO:0042026|GO:0140662
Phco1g00305 570 PRINTS 60kDa chaperonin signature 294 317 IPR001844 GO:0042026|GO:0140662
Phco1g00305 570 PRINTS 60kDa chaperonin signature 376 401 IPR001844 GO:0042026|GO:0140662
Phco1g00305 570 PRINTS 60kDa chaperonin signature 109 136 IPR001844 GO:0042026|GO:0140662
Phco1g00305 570 PRINTS 60kDa chaperonin signature 424 445 IPR001844 GO:0042026|GO:0140662
Phco1g00305 570 SUPERFAMILY GroEL equatorial domain-like 33 548 IPR027413 -
Phco1g00305 570 Pfam TCP-1/cpn60 chaperonin family 49 550 IPR002423 GO:0005524
Phco1g00305 570 SUPERFAMILY GroEL apical domain-like 210 402 IPR027409 -
Phco1g00305 570 FunFam 60 kDa chaperonin 218 399 - -
Phco1g00305 570 Hamap Chaperonin GroEL [groEL]. 28 568 IPR001844 GO:0042026|GO:0140662
Phco1g00305 570 ProSitePatterns Chaperonins cpn60 signature. 431 442 IPR018370 GO:0005524|GO:0006457
Phco1g00305 570 Coils Coil 365 385 - -
Phco1g00305 570 Gene3D - 163 436 IPR027410 -
Phco1g00305 570 Coils Coil 452 472 - -
Phco1g00305 570 Gene3D GroEL 218 399 IPR027409 -
Phco1g00305 570 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 28 559 IPR001844 GO:0042026|GO:0140662
Phco1g00305 570 SUPERFAMILY GroEL-intermediate domain like 164 230 IPR027410 -
Phco1g00305 570 CDD GroEL 30 550 IPR001844 GO:0042026|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00305 Phco-Chr1 2247114 2253339 Wgd