Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00302 ATGGGGCTGCAGCTGATTTTCCTGCTAATTGAGCTGCATTTAGTTGTCTGCGCTCAGCAGATTCATGCATATGCAGCCACCAAACTGCCAGACTCCAGAGACAGAAGGCATATTAGTATTGCAATCCCACCATCAAAGTCATCTTCTGAAGGTCATTCAAGTATTATTGCACATTCACCTTCCAAGTCATCTTCTCGGGTACCTTCAAGCATTGCACTTTCACCTTCCAAGTCAATTCACAAAGCTCCTACAATCATATGGACACATAGTTCTGTGGATTCCCCAATCTCACATCATAAGCATCACTATTTTAAAAGAAAGTCACACAATCCAGCTCTAGCACCAATCTACTCAGTCCAGGCTCCTACATACAGCCATCAAGGTCCTTCAGTCTTCAAATCACGACCTCCTTTCTCTTCACCAAATATTATGGATATTCATGCCCCGGCCCCTGCACCATCAGCAGCTATTGTGCCGGGTCACCTCGATGTACCCTCTACTTCACCTACAATTTCTCCTCTAGGTTCATCATTGCAGAAGAAAAAGACTCCACCTCCTGCATATGAATTGGTTCTGCCACCTCCACCTCCTAATAAGGATTGCTTGCCAATGACTTGCTCAGAGCCCTTGACGTATACTCCTCCTGGGTCACCTTGTGGTTGTGTATGGCCACTTCAGGTTAAAATCCATATCAACATTGCAATATACAAGTTTTTTCCGTTGGTTGCAGAGCTAGCCAAGGAAATTGCAGCAAGTGTTCTACTGAACCATACCCAGGTTCGCATTGTGGAAGCTGATGCAGCTAGTCAGCAACTGGAGAAAACCACTGTTCTATTAGACTTAGTACCCAAAGGAGTAAAATTTGATGATACCACCGCATTTTTAATATATAAGAAATTCTGGCGCAGGGAGATTCTGATAGATGCTTCAGTCTTTGGTGCTTATGAAGTACTCTATGTTCAGTATCCAGGTCTTCCACCATCTCCACCTTCAACTCCATCAGATGCTTCTGTTATAGATGATGAGCCAAATCCAGGACATGACAACAATGGAATGATGATGAAACCTTTAGGAGTGGATGTCCCAAAGAGGAAAAAAGAAGGGAGTAATGGAAGAATGATTGTTATAATTGTGCTGTCATCAGTTACTGCTTTTGTTGTATTCGTTGCTCTTGCTTGGATTTGTGCACTGAAATGCTGTGCCTATGTTCATGAACACAAACCAGTTCCCGATGGTTTAATTTCATCCTCTTCAAAACAATCAAGGGCTGCAAGTTCATTGGCTTACGGGATCAGGTCAGGTTCTGGATTGCAGTCCTTCAATTCTGGAACAATAACATATACAGGGTCTGCTAAGATTTTTACTTTGAATGACATAGAAAAAGCAACAAATAACTTTGATTCTTCGAGAATATTAGGAGAAGGTGGTTTTGGACTTGTTTACGAAGGTGTTCTAAATGATGGGAGGAATATAGCCGTGAAGGTTCTCAAAAGAGATGATCAACGTGGTGGTCGTGAATTCTTGGCAGAAGTTGAGATGCTTAGCCGTCTACACCATCGAAATTTAGTTACATTGTTTGGTATATGCATAGAGAAACAGACTCGCTGCTTAGTTTATGAGCTTGTCCCTAATGGAAGTGTGGAATCCCACTTACATGGACCTGACAAGGAAACTGATCCACTGGATTGGAATGCGAGGATGAAGATTGCTCTTGGTGCAGCTCGGGGTTTGGCCTATCTGCATGAAGATTCAAATCCATGTGTCATACATCGGGATTTCAAGGCTAGCAACATCTTGTTGGAGTATGATTTTACACCCAAGGTCTCAGATTTTGGATTGGCTAGAACAGCACTGGATGAGAGAAACAAGCACATCTCCACACATGTTATGGGAACATTTGGATACTTAGCTCCTGAATATGCAATGACTGGCCATCTTCTTGTCAAGAGTGATGTTTACAGTTATGGAGTTGTACTCCTTGAGCTCCTAACTGGAAGAAAGCCCGTGGATTTGTCACAACCACCAGGTCAAGAAAATCTTGTGACGTGGGTTCGTCCACTTCTCACTAGTAAGGAGGGTTTGCAGATGATCATAGACCCAGTTGTAAAGCCTAGCATTTCTGTTGATATTGTAGTTAAAGTTGCAGCGATTGCATCCATGTGTGTGCAACCAGAAGTCTCACAACGTCCTTTCATGGGAGAAGTTGTTCAGGCCTTGAAGCTGGTGTGCAGTGAGGTTGAGGAAACAGACTATTTAAGATCAATGAGTTATCAAGAGGGTATTCTAACTGATGTGGAAGGAAAGTTTTCTGAAGCTTCAGGTGAAAGAGTGGAATTTTCGGAGTATCAAAAAACTCTTTCTGGCTATCAATCTGGTGAAGAAAAGGTAGAATTATCAGCATCAGAGTTTGTCAGTACTTCAGGTCAGGAATTTGAGTCATTCAGGAGGTATTCTCGATCAGGGCCTCTAACTATTGGGAAGAAAAGGCAGTTCTGGCAGAAGTTGCGAAGTTTGTCAAGTGGTAGTACCAGTGAACATGGATTTTCAACTAAACTATGGTCTGGATCCCATTAA 2574 0.4258 MGLQLIFLLIELHLVVCAQQIHAYAATKLPDSRDRRHISIAIPPSKSSSEGHSSIIAHSPSKSSSRVPSSIALSPSKSIHKAPTIIWTHSSVDSPISHHKHHYFKRKSHNPALAPIYSVQAPTYSHQGPSVFKSRPPFSSPNIMDIHAPAPAPSAAIVPGHLDVPSTSPTISPLGSSLQKKKTPPPAYELVLPPPPPNKDCLPMTCSEPLTYTPPGSPCGCVWPLQVKIHINIAIYKFFPLVAELAKEIAASVLLNHTQVRIVEADAASQQLEKTTVLLDLVPKGVKFDDTTAFLIYKKFWRREILIDASVFGAYEVLYVQYPGLPPSPPSTPSDASVIDDEPNPGHDNNGMMMKPLGVDVPKRKKEGSNGRMIVIIVLSSVTAFVVFVALAWICALKCCAYVHEHKPVPDGLISSSSKQSRAASSLAYGIRSGSGLQSFNSGTITYTGSAKIFTLNDIEKATNNFDSSRILGEGGFGLVYEGVLNDGRNIAVKVLKRDDQRGGREFLAEVEMLSRLHHRNLVTLFGICIEKQTRCLVYELVPNGSVESHLHGPDKETDPLDWNARMKIALGAARGLAYLHEDSNPCVIHRDFKASNILLEYDFTPKVSDFGLARTALDERNKHISTHVMGTFGYLAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDLSQPPGQENLVTWVRPLLTSKEGLQMIIDPVVKPSISVDIVVKVAAIASMCVQPEVSQRPFMGEVVQALKLVCSEVEETDYLRSMSYQEGILTDVEGKFSEASGERVEFSEYQKTLSGYQSGEEKVELSASEFVSTSGQEFESFRRYSRSGPLTIGKKRQFWQKLRSLSSGSTSEHGFSTKLWSGSH 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00302 857 ProSitePatterns Protein kinases ATP-binding region signature. 472 494 IPR017441 GO:0005524
Phco1g00302 857 Gene3D Transferase(Phosphotransferase) domain 1 542 760 - -
Phco1g00302 857 Pfam Protein tyrosine and serine/threonine kinase 469 739 IPR001245 GO:0004672|GO:0006468
Phco1g00302 857 CDD STKc_IRAK 472 740 - -
Phco1g00302 857 MobiDBLite consensus disorder prediction 42 75 - -
Phco1g00302 857 FunFam receptor-like serine/threonine-protein kinase ALE2 439 541 - -
Phco1g00302 857 ProSiteProfiles Protein kinase domain profile. 466 742 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g00302 857 PANTHER OS01G0750732 PROTEIN 193 757 - -
Phco1g00302 857 Gene3D Phosphorylase Kinase; domain 1 439 541 - -
Phco1g00302 857 MobiDBLite consensus disorder prediction 328 353 - -
Phco1g00302 857 FunFam Receptor-like serine/threonine-protein kinase ALE2 542 757 - -
Phco1g00302 857 SUPERFAMILY Protein kinase-like (PK-like) 446 739 IPR011009 -
Phco1g00302 857 ProSitePatterns Serine/Threonine protein kinases active-site signature. 588 600 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00302 Phco-Chr1 2232434 2238009 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Phco1g00302 PK_Tyr_Ser-Thr 1.1e-46 CL0016