Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00297 ATGAGTAGCCATGCAAATTGCAATGCAATAGCAACTTCAGCAGATAAAATCAGGAGAGAAACTGAAAAACGCTCTTTGAGGAGCCACAGGAGGAGGAAAGTGAAGAGTGTATTATCGAAGGACATCATGAGCCGCTACGACAGCCGCTCCGGTGACCCCACTTCCTACCGTGACCGGAGGAGTGATTCTGGCCTAGGTGCATCTACAGGGTTTGGTGGTTCTGTGCAGCACTCTTCATCAAACAGGAGGGATCATGATGATGGTGGGTCACCAAAGAGGAACCTCAGTTTGGATGGTTTACCTCATTTCGAGAAAAACTTCTACATTGAGTCACCTGCAGTAAGGGCAATGACAGATGCTGAGGTTAATGAGTACCGACAGCAGAGGGAAATAACTGTTGAAGGTCGAGATATCCCCAAGCCTGTCAAAACCTTTCAAGATGCTGGTTTTCCAGAATACGTGTTGCAAGAAATTACAAAAGCTGGTTTTACTGAACCTACACCCATTCAATCTCAAGGTTGGCCCATGGCTTTGAAGGGGCGTGATCTGATAGGAATAGCAGAAACAGGTTCAGGGAAGACACTTGCTTACTTGTTACCTGCCATTGTGCATGTTAATGCTCAGCCGATTCTAGATCCTGGAGATGGGCCTATTGTGTTAGTATTGGCTCCAACTCGTGAACTTGCTGTTCAAATACAACAAGAGGCTACTAAATTTGGTGCATCGTCTAGGATTAAGAGTACATGTATCTATGGTGGGGTTCCGAAGGGGCCTCAGGTGCGTGATCTCCAGAAAGGTGTCGAAATTGTAATTGCCACTCCCGGAAGGTTAATTGATATGCTTGAATCAAATCATACCAACTTGCAGAGGGTCACATATCTTGTATTGGATGAAGCTGATAGGATGTTGGATATGGGGTTTGATCCTCAGCTGCGGAAGATTGTTTCTCAGATTCGGCCGGACCGTCAAACTTTGTATTGGAGTGCTACCTGGCCGAAGGAGGTCGAACAATTGGCACGGAAGTTCCTTTATAACCCATACAAAGTAATTATAGGGTCTGAAGATTTAAAAGCTAACCATGCAATACGTCAATATGTTGACATTGTTTCAGAAAAGCAGAAATATGATAAATTGGTGAAGTTGCTAGAGGACATCATGGATGGCAGCCGAATACTGATATTCATGGATACCAAAAAAGGATGTGATCAGATTACTAGGCAACTCCGCATGGATGGCTGGCCTGCACTTTCAATTCATGGAGACAAAAGTCAAGCAGAAAGAGATTGGGTTCTCTCAGAATTTAAATCGGGAAAAAGTCCTATTATGACTGCAACAGATGTTGCAGCCCGTGGTTTAGATGTGAAGGATGTGAAATATGTAATAAATTATGACTTCCCGGGGTCACTTGAGGATTATGTCCATCGCATTGGGCGGACTGGAAGAGCTGGTGCAAAAGGAACTGCCTACACATTCTTCACAGCTGCAAATGCTAGATTTGCAAAGGAACTTATCGCCATACTTGAGGAAGCTGGACAGAAAGTGAGTCCTGAATTAGCAGCAATGGGGCGTGGTGCACCACCTCTGCCTTCAGGTCCTCGAGGCTTCCAAGACCGTGGGAGGGGTTATGGCAGTTCTCGTCCATGGAGCTAA 1650 0.4533 MSSHANCNAIATSADKIRRETEKRSLRSHRRRKVKSVLSKDIMSRYDSRSGDPTSYRDRRSDSGLGASTGFGGSVQHSSSNRRDHDDGGSPKRNLSLDGLPHFEKNFYIESPAVRAMTDAEVNEYRQQREITVEGRDIPKPVKTFQDAGFPEYVLQEITKAGFTEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELAVQIQQEATKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESNHTNLQRVTYLVLDEADRMLDMGFDPQLRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYNPYKVIIGSEDLKANHAIRQYVDIVSEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIAILEEAGQKVSPELAAMGRGAPPLPSGPRGFQDRGRGYGSSRPWS 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00297 549 Gene3D - 351 523 IPR027417 -
Phco1g00297 549 Gene3D - 106 350 IPR027417 -
Phco1g00297 549 Pfam DEAD/DEAH box helicase 167 338 IPR011545 GO:0003676|GO:0005524
Phco1g00297 549 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 377 522 IPR001650 -
Phco1g00297 549 MobiDBLite consensus disorder prediction 1 98 - -
Phco1g00297 549 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 174 349 IPR014001 -
Phco1g00297 549 FunFam ATP-dependent RNA helicase RhlB 353 525 - -
Phco1g00297 549 SMART ultradead3 162 365 IPR014001 -
Phco1g00297 549 CDD SF2_C_DEAD 362 492 - -
Phco1g00297 549 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 143 171 IPR014014 GO:0003724
Phco1g00297 549 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 295 303 IPR000629 -
Phco1g00297 549 FunFam probable ATP-dependent RNA helicase DDX17 105 352 - -
Phco1g00297 549 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 111 521 - -
Phco1g00297 549 Pfam Helicase conserved C-terminal domain 374 483 IPR001650 -
Phco1g00297 549 MobiDBLite consensus disorder prediction 519 549 - -
Phco1g00297 549 MobiDBLite consensus disorder prediction 37 59 - -
Phco1g00297 549 CDD DEADc_DDX5_DDX17 154 349 - -
Phco1g00297 549 SMART helicmild6 402 483 IPR001650 -
Phco1g00297 549 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 215 498 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00297 Phco-Chr1 2170731 2178939 Dispersed/Wgd