Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00294 ATGGAGTTTCAAGAGACGCGTGTATCTCTGAGATCGGGCTTGACGTTTGGAGAGACGCTGTGTGCGGTGTGCATTCCGCTCATAGGACTTGTTGAAGCTTTGGTTTTCAGCTTAGCTGGTTGCTTCGATTTCCATTCTCCGGCGAAGAAGAAGAAGCCCTCTTCTGCTACCTTCAACGACATTCTCGCCCTCGCCAAGGACTCTCCGTTTACTGTTAATGAGATTGAGGCTTTGCATGAGTTGTTCAAGAAGTTGAGTAGCTCAATCATTGACGATGGCCTCATCCACAAGGAAGAACTCACATTGGCATTGTTGAAGACCACAACTGGGGAGAATCTTTTCCTTGACAGGGTGTTTGATGTTTTCGATGAAAAAAGAAATGGTGTTATAGAATTTGAGGAGTTTGTGCATGCTCTCAATATCTTTCATCCTTGTACTCCTTCGGAAAAGAAAATTGACTTTTCTTTTAAATTGTATGACTTGAGACAGACTGGATATATTGAGCAAGAAGAAGTTAGGCAAATGGTTGTTGCCATTTTGTCAGAATATGGGATGGACCTGGAAGATGAAGCTCTTGATGCCATTATTGATAAGACATTTCAAGAGGCCGATGCTGATAGAGATGATAAAATAAGCAAAGAAGAATGGAAGGCATTTGTCACTCGACACCCAACACTCTTGAAGCACATGACTCTTCCTCATCTGGCGGACATCAGCACACTGTTTACCAGTTTCATTTTTAACACCGAAGTTGATGATTCTCACTGGCAAATTAGTGGCAACCATAAACATTGA 795 0.4239 MEFQETRVSLRSGLTFGETLCAVCIPLIGLVEALVFSLAGCFDFHSPAKKKKPSSATFNDILALAKDSPFTVNEIEALHELFKKLSSSIIDDGLIHKEELTLALLKTTTGENLFLDRVFDVFDEKRNGVIEFEEFVHALNIFHPCTPSEKKIDFSFKLYDLRQTGYIEQEEVRQMVVAILSEYGMDLEDEALDAIIDKTFQEADADRDDKISKEEWKAFVTRHPTLLKHMTLPHLADISTLFTSFIFNTEVDDSHWQISGNHKH 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00294 264 Pfam EF-hand domain pair 150 219 IPR002048 GO:0005509
Phco1g00294 264 Gene3D - 62 254 - -
Phco1g00294 264 ProSiteProfiles EF-hand calcium-binding domain profile. 147 182 IPR002048 GO:0005509
Phco1g00294 264 CDD EFh 151 221 IPR002048 GO:0005509
Phco1g00294 264 ProSiteProfiles EF-hand calcium-binding domain profile. 110 145 IPR002048 GO:0005509
Phco1g00294 264 SUPERFAMILY EF-hand 64 243 IPR011992 -
Phco1g00294 264 FunFam calcineurin B-like protein 3 60 253 - -
Phco1g00294 264 ProSitePatterns EF-hand calcium-binding domain. 204 216 IPR018247 -
Phco1g00294 264 SMART efh_1 151 179 IPR002048 GO:0005509
Phco1g00294 264 SMART efh_1 195 223 IPR002048 GO:0005509
Phco1g00294 264 SMART efh_1 114 142 IPR002048 GO:0005509
Phco1g00294 264 Pfam EF-hand domain pair 92 138 IPR002048 GO:0005509
Phco1g00294 264 ProSiteProfiles EF-hand calcium-binding domain profile. 191 226 IPR002048 GO:0005509
Phco1g00294 264 PRINTS Recoverin family signature 165 183 - -
Phco1g00294 264 PRINTS Recoverin family signature 211 231 - -
Phco1g00294 264 PRINTS Recoverin family signature 118 139 - -
Phco1g00294 264 PANTHER CALCINEURIN B 40 254 IPR045198 GO:0005509|GO:0019722|GO:0019900
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00294 Phco-Chr1 2152298 2155263 Transposed