Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00290 ATGCTGCTATCAACAAAACTCAGGGTCTCAACCAACACCGGTCTCTCTTTCTGGGTTGGCTTATCTGCTGATAAAGCCTCCGACTTTGTTTCATTTTGGTGTTTTCTTTCAGAAAGCTTGAAGTGCATTTTGCATTTTGAACTGGAGGCTGCTGCATCATCAACCTCTTGCTTCTTGCTTTCTGATCCACAAAAGGAGTTGAATCTTTTGAGCAAGGAAACTCTTGTGGCATTATTGTTGGTGCTGATGAGTCGAGAGCAACAGAAGCGGGCGAAGCAAGAGAAAGGTTCTGATGGTGCTGAGAAGGTCATTGTTGCTGTTAAGGCATCAAAAGAAATTCCAAAGACTGCTCTTGTTTGGTCCCTGACTCATGTTGTTCAACCTGGGGATTGCATTACACTGCTAGTGGTTGTGCCTTCACAAAGTTCAGGCAGAAGATTATGGGGTTTTCCGAGATTTGCTGGTGACTGTGCCAGTGGTATTAAGAAGTACCCTCCAGGAACAATATCTGAGCAGAAAAGTGATATCACTGATTCTTGCTCCCAGATGATCCTTCAACTCCATAACGTCTATGATCCAAACAAGATCAATGTCAGGATTAAAATTGTTTCTGGATCACCTTGTGGAGCAGTGGCAGCAGAAGCCAAGAAAGCACAAGCCAATTGGGTCGTATTAGACAAACTGCTCAAACATGAAGAAAAGCGATGCATGGAAGAACTACAGTGTAACATTGTGGTTATGAAGCGTTCTCAACCAAAAGTACTGCGGTTGAATTTGATTGGACCTCAAAAGAAGGATGTTGAAGAAGCAGGTCCGTCACCTCCTGAGCAAGAGGACATTTCTGATAAGCGAAGCAAAATAAAGCTTGATTCCTTAAATTCTATCAAAGGACCAGCTGTAACTCCATCTAGCAGCCCCGAGCTAGGGACACCATTCACTGCAACTGAAGCTGGTACTTCATCAGTTTCAAGCTCTGATCCGGGAACTTCACCATTCTTCATCTCAGAGATGAATGGTGAGTCCAAAAAAGAGGAAACTATCCAGGAAAGTCAAGAGCTTGGTGATACTAATTCAGACACAGAAAGTGAAAGTCTGTCCACATCTTCAGCAAGCATGAGATACCAACCATGGATCACAGAATTGCTTTTACATCAACAATCATCACAACGCAATGAAGAGAGAACAGAGATATCTCATGGTATGCCTCAAGCATCTACAACCAGAGCTTTCCTAGATAAGTATTCTAGGCTTGATAGAGGAGCTGGATTTGAAATCTCAACCTATAGGAATGACTTGGATTTCAGTGGAAATTTAAGAGAAGCAATAGCATTATCTGGAAATGCCCCACCTGGTCCTCCTCCACTGTGTTCAATATGTCAACACAAGGCACCTGTTTTTGGAAAACCTCCAAGATGGTTCAGCTACGCTGAGTTAGAACTTGCTACAGGTGGTTTTTCGCAGGCCAACTTCCTGGCTGAAGGAGGGTTTGGATCTGTTCACAGAGGGGTTCTACCTGAAGGACAAGTCATTGCTGTCAAGCAACATAAATTAGCTAGTTCTCAAGGTGATCTTGAATTTTGTTCAGAGGTGGAAGTCCTGAGCTGTGCTCAACACCGGAATGTTGTTATGCTCATTGGCTTCTGTATAGAGGATAAGAGAAGGCTACTGGTTTATGAGTACATATGCAATGGATCATTGGATTCGCATTTATATGGGCGACAAAAGGATCCATTAGAGTGGTCAGCACGGCAAAAAATTGCCGTGGGAGCAGCTCGTGGATTACGATATCTTCATGAAGAATGCAGAGTGGGTTGCATTATCCACCGTGACATGAGGCCAAACAACATTCTCATAACTCACGATTTTGAACCTCTGGTTGGTGATTTTGGACTGGCAAGGTGGCAGCCTGATGGAGACACAGGTGTGGAAACTAGAGTGATTGGAACATTTGGGTATTTGGCTCCTGAATATGCTCAAAGTGGTCAAATCACTGAAAAAGCTGATGTTTATTCCTTTGGGGTGGTATTAGTTGAGCTTGTTACAGGGAGAAAAGCTGTGGATCTCACTAGGCCAAAGGGACAGCAGTGCCTTACCGAGTGGGCACGACCTCTCTTAGAAGAATATGCAACTGAGGAACTGATTGATCCAAGACTTGATAACCACTATTCTGAAAATGAGGTCTATTGCATGCTGCATGCTGCCTCATTATGCATACAGCGAGATCCTCAATGTAGACCACGCATGTCACAGGTCCTCCGAATACTAGAGGGTGACATGGTGGTGGACACAAATTACATCTCAACTCCAGGCTATGATGCAGGAAACCGAAGTGGTAGATTGTGGTCAGAACCATTACAAAGGCAGCACCATTATAGTGGTCCCCTGTTAGAAGAGTCTGTAGAGTCCTTCAGTGGGAAGCTATCCCTTGACAAGTACAGGCCTTCCTATTGGGGTGATAGGGACAAGGCTAGGAGGGCCTCATGTGAAGATGACATTTGA 2499 0.4422 MLLSTKLRVSTNTGLSFWVGLSADKASDFVSFWCFLSESLKCILHFELEAAASSTSCFLLSDPQKELNLLSKETLVALLLVLMSREQQKRAKQEKGSDGAEKVIVAVKASKEIPKTALVWSLTHVVQPGDCITLLVVVPSQSSGRRLWGFPRFAGDCASGIKKYPPGTISEQKSDITDSCSQMILQLHNVYDPNKINVRIKIVSGSPCGAVAAEAKKAQANWVVLDKLLKHEEKRCMEELQCNIVVMKRSQPKVLRLNLIGPQKKDVEEAGPSPPEQEDISDKRSKIKLDSLNSIKGPAVTPSSSPELGTPFTATEAGTSSVSSSDPGTSPFFISEMNGESKKEETIQESQELGDTNSDTESESLSTSSASMRYQPWITELLLHQQSSQRNEERTEISHGMPQASTTRAFLDKYSRLDRGAGFEISTYRNDLDFSGNLREAIALSGNAPPGPPPLCSICQHKAPVFGKPPRWFSYAELELATGGFSQANFLAEGGFGSVHRGVLPEGQVIAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNGSLDSHLYGRQKDPLEWSARQKIAVGAARGLRYLHEECRVGCIIHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLTRPKGQQCLTEWARPLLEEYATEELIDPRLDNHYSENEVYCMLHAASLCIQRDPQCRPRMSQVLRILEGDMVVDTNYISTPGYDAGNRSGRLWSEPLQRQHHYSGPLLEESVESFSGKLSLDKYRPSYWGDRDKARRASCEDDI 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00290 832 MobiDBLite consensus disorder prediction 292 369 - -
Phco1g00290 832 ProSiteProfiles Protein kinase domain profile. 485 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g00290 832 MobiDBLite consensus disorder prediction 269 284 - -
Phco1g00290 832 SUPERFAMILY Protein kinase-like (PK-like) 469 762 IPR011009 -
Phco1g00290 832 PANTHER OS01G0750732 PROTEIN 244 762 - -
Phco1g00290 832 CDD STKc_IRAK 491 757 - -
Phco1g00290 832 FunFam Dual-specific kinase DSK1-like 94 248 - -
Phco1g00290 832 ProSitePatterns Tyrosine protein kinases specific active-site signature. 606 618 IPR008266 GO:0004672|GO:0006468
Phco1g00290 832 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 561 764 - -
Phco1g00290 832 MobiDBLite consensus disorder prediction 265 284 - -
Phco1g00290 832 Gene3D Transferase(Phosphotransferase) domain 1 561 766 - -
Phco1g00290 832 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 457 560 - -
Phco1g00290 832 MobiDBLite consensus disorder prediction 296 336 - -
Phco1g00290 832 Gene3D Phosphorylase Kinase; domain 1 457 560 - -
Phco1g00290 832 Pfam Protein tyrosine and serine/threonine kinase 489 754 IPR001245 GO:0004672|GO:0006468
Phco1g00290 832 MobiDBLite consensus disorder prediction 351 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00290 Phco-Chr1 2122925 2128972 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Phco1g00290 PK_Tyr_Ser-Thr 2.4e-41 CL0016