Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00280 ATGCAAGACCCGACAGCATTCCCAGGTTTGAAGCACCCTCAGTTTCCCGAACAAGAACAACTCAAATGCCCGCGTTGTGACTCCACAAACACCAAATTCTGCTACTACAACAACTACAACCTCTCTCAGCCACGCCACTTTTGCAAGAACTGCCGAAGGTACTGGACAAAGGGTGGTGCTTTGAGAAACATCCCTGTTGGGGGTGGAAGTAGAAAGAGCACAAAACGTTCATCCACCTCAAAACGCTCTTCTGCACCGCCTTCCTCTGCTGTCTCTGAGGCTGACCCCACCCGGATTTGCACCAACCCGGTTGAGCAAGACCATAGGGTGGTCAACATTGGTGGCACCTTCAGTTCTCTGTTGGCTTCATCTGGGCACTTTGGAACCCTCTTGGAGGGTCTGAATCCAACTGGGTCGGATCCCAAAATGGGTGAATTTGGGGAGGGTGTGAGTTCTGACCTGGGTTTGAATTCGAATTCGGGTTCAAACCCGGGTTTGCAGCTTCAGAGTAATGGGAGTTCAGAGGGTTTTCTGGGTATGCAGAATGGGGAATCAACCTGTTGGAATGGTGGTCATGGTTGGTCTGATCTTGCAATATACACACCTCGCCCAAGTTTTCAATAG 624 0.5048 MQDPTAFPGLKHPQFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKSTKRSSTSKRSSAPPSSAVSEADPTRICTNPVEQDHRVVNIGGTFSSLLASSGHFGTLLEGLNPTGSDPKMGEFGEGVSSDLGLNSNSGSNPGLQLQSNGSSEGFLGMQNGESTCWNGGHGWSDLAIYTPRPSFQ 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00280 207 Pfam Dof domain, zinc finger 19 75 IPR003851 GO:0003677|GO:0006355
Phco1g00280 207 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 149 IPR045174 GO:0003700|GO:0006355
Phco1g00280 207 MobiDBLite consensus disorder prediction 70 96 - -
Phco1g00280 207 MobiDBLite consensus disorder prediction 62 98 - -
Phco1g00280 207 ProSitePatterns Zinc finger Dof-type signature. 23 59 IPR003851 GO:0003677|GO:0006355
Phco1g00280 207 ProSiteProfiles Zinc finger Dof-type profile. 21 75 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00280 Phco-Chr1 2031518 2032141 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Phco1g00280 zf-Dof 2.1e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00280 1 2031518 2032141 Phco1g00280 1 2031518 2032141 ECH
Phco10g01834 10 40604740 40605357 Phco1g00280 1 2031518 2032141 PCT