Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00269 ATGAATTTCTTCAACTGGGTCTGTTTGTTCATCGTTTTTCATGCCTTTGCTGCAGCACCCAGCTTCTTCTCGTTAACAGATTCGTCCACACAACTCCCCACCAACTTTTTAGATGCTGCCAAGAAGCCTGAGGTATTTGACTGGATGGTCAGAATCAGAAGGAAGATTCACGAGAATCCAGAATTGGGTTATGAGGAATTTGAGACCAGTAAATTCATTAGAGGGGAATTGGATCAACTGGGTATACCCTATAAACACCCTGTTGCAATCACCGGTGTAATTGGCTTCATTGGGACTGGAAGATCGCCTTTTGTTGCTATAAGAGCTGATATGGATGCTCTTCCCATGCAGGAAATGGTGGAGTGGGAGCACAAGAGTAAAGTACCTGGAAAGATGCATGCTTGTGGTCATGATGCTCATGTGGCTATGCTTCTTGGTGCTGCGAAGATTCTTAAACAGCATGAAAAAGAGATACAAGGAACTGTAGTTCTTGTTTTCCAACCAGCAGAGGAAGGAGGTGGGGGAGCCAAGAAAATTTTAGATGCTGGAGCCTTAGAAAATGTTACAGCTATTTTTGGGTTGCATGTGTCACGCGACTTTCCATTAGGTGAAGTGGGCTCTAGGTCTGGTCCATTATTAGCAGGAAATGGTTTTTTTGAAGCTATAATAAAGGGAAAAGGAGGTCATGCAGCTATTCCTCAACAATCTATAGACCCTATATTGGCAACTTCTAATGTTATAATTAGCTTACAGAATCTTGTTTCTCGTGAGGCTGATCCTCTGGATTCCCAGGTTGTGACTGTAGGAAAATTCCAAGGAGGCAGTGCATTCAATATCATTCCAGATTCTGTCACGATCGGTGGCACCTTCCGAGCTTTTTCAAAAGAAAGTTTCCAGCAATTAAAACAGCGCATTGAGGAGGTTGTGATTGCACAAGCTGCTGTGCAGAGGTGCAATGCAACAGTCAACTTCCTTCAGGAACTGAATCCTTTCTTTCCCGTAACCATAAACAATGGTGACTTGCATGAACATTTTCAGAGTGTTGCTGGGAATTTGCTTGGCGTGAATAAAGTAAATAACATGCAACCCTTGATGGGAGCCGAAGACTTTTCATTCTATCAGGAGGTTATACCTGGTTACTTTTTCATGGTTGGAATGCAGAATGCCTCACATGAAAAACTTGAGCAAGCGCACTCACCGCATTTCAAGATCAATGAAGATGTACTTCCTTATGGGGCTGCACTTCATGCCTCATTAGCTGTTAGTTATCTTCTGAAACATCCACAGGACATAGCCCCTGCAGAGGGGAAATATCATGATGAATTGTAA 1329 0.4296 MNFFNWVCLFIVFHAFAAAPSFFSLTDSSTQLPTNFLDAAKKPEVFDWMVRIRRKIHENPELGYEEFETSKFIRGELDQLGIPYKHPVAITGVIGFIGTGRSPFVAIRADMDALPMQEMVEWEHKSKVPGKMHACGHDAHVAMLLGAAKILKQHEKEIQGTVVLVFQPAEEGGGGAKKILDAGALENVTAIFGLHVSRDFPLGEVGSRSGPLLAGNGFFEAIIKGKGGHAAIPQQSIDPILATSNVIISLQNLVSREADPLDSQVVTVGKFQGGSAFNIIPDSVTIGGTFRAFSKESFQQLKQRIEEVVIAQAAVQRCNATVNFLQELNPFFPVTINNGDLHEHFQSVAGNLLGVNKVNNMQPLMGAEDFSFYQEVIPGYFFMVGMQNASHEKLEQAHSPHFKINEDVLPYGAALHASLAVSYLLKHPQDIAPAEGKYHDEL 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00269 442 Gene3D - 214 332 - -
Phco1g00269 442 CDD M20_IAA_Hyd 49 424 IPR044757 GO:0009850|GO:0016787
Phco1g00269 442 PANTHER PEPTIDASE M20 FAMILY MEMBER 27 430 IPR017439 GO:0016787
Phco1g00269 442 SUPERFAMILY Zn-dependent exopeptidases 44 426 - -
Phco1g00269 442 PIRSF Amidohydrol_AmhX 36 428 IPR017439 GO:0016787
Phco1g00269 442 Pfam Peptidase family M20/M25/M40 106 420 IPR002933 GO:0016787
Phco1g00269 442 NCBIfam amidohydrolase 49 411 IPR017439 GO:0016787
Phco1g00269 442 Gene3D Zn peptidases 49 409 - -
Phco1g00269 442 Pfam Peptidase dimerisation domain 217 313 IPR011650 -
Phco1g00269 442 SUPERFAMILY Bacterial exopeptidase dimerisation domain 215 324 IPR036264 -
Phco1g00269 442 FunFam N-acetyldiaminopimelate deacetylase 214 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00269 Phco-Chr1 1931501 1938179 Dispersed/Tandem