Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00265 ATGGATGGTTTGAGTTGGGATACCTCTCAACTTGAAGCAAACACACAAATCCTTTGGAGTACTATTCAGTCACCACCAGACTTTGAAGGAGGCTACTCCATGCCCAATGTTCTCAATCAAATACAAGAAATGGAGAAAGCTCAAACAGGTCATGCACACTCATATTCTGAAAGAGTGATTTATCAGTCAGCAGATGCTACCACCACTTCTTCAGAGATAATGGATGAGATGCAAAGGCAAAACACAAATCTTTTACAGCATGCACCAACCATGATGCCAGTGAAATCAGGAACTGGAGCCAGTTGGGGAGAAGCTTTCACATCTCAATCATACCCATCTCTATCGGTCAATGGACCTCAAAGTATGAACCTGATTAGCAACTACATGCCAGGTTTCAGCATGGCCCACCAACAACAACAGCAACAACAACTTGTCAAAGGCTCACAAAATGGGAAGGGTACTTGCTCTCTTGAATCTTTTGACTGCTTGATTTCAGCTACCAATAGCAACCCAGACACATCTGTTGAAGATGACGGGATCTCAATGATTTTATCTGACTGTAGAAACTTGTGGAACTTCAGCTGTGGCAGTGCAGCTTCCACTGGTGAATCTGAGAGTAATGCTTCCAATGGTAGAAAGAAAGACATGAAGTGTCCAGTCAATGAAGTTGATGAAACAGTTTCTCAAAGCTCCTTGGATCAAGGAAAAACAGTACAATCAAAGGCTAATTTTTCAAAGAGGAGCCCTGAGGAAACTGAAATGATCAAAGTTGGTGACACTGGCAGTGGTTCCTGCTTCAGTATTGTTCAGAATTCTTCTTCTATTGAAGAAGGTGGATTCAGACTTATCTCAGATGATCTATCAAAAAGGAAGAAACCCAGATGGGACACGAGTTCCTTTTCAAATAATATCAATTTCCAGCAACCAAATTCATCCAGGTCTTCATCCATTGAGGAACCTGATCCAGAGGTCATTGCACAAATGAAGGAAATGATATATAGGGCTGCAGCTTTTAGGCCTGTGAACTTTGGCTTGGATGGGGCTGAGAAGCCAAAGAGGAAGAATGTGAGAATATCAACTGATCCACAAACTGTGGCTGCAAGGCATAGAAGGGAGAGAATAAGTGAGAGGATTAGGGTTTTGCAGAAGCTTGTGCCTGGGGGAAGCAAGATGGACACAGCATCAATGCTTGATGAGGCTGCAAACTACCTCAAGTTTCTCAGGTCACAGGTTAAGGCACTGGAATGTCTTGGAAACAAAGTTGATGCAATGAATTGTCCTCCTACAAGCATTGCCTTCTCTTTCAACCCTTCTTTTCCGATGCAAACATCTCTCAGTCACATCCATCATTCCCAGGGTTGA 1362 0.4288 MDGLSWDTSQLEANTQILWSTIQSPPDFEGGYSMPNVLNQIQEMEKAQTGHAHSYSERVIYQSADATTTSSEIMDEMQRQNTNLLQHAPTMMPVKSGTGASWGEAFTSQSYPSLSVNGPQSMNLISNYMPGFSMAHQQQQQQQLVKGSQNGKGTCSLESFDCLISATNSNPDTSVEDDGISMILSDCRNLWNFSCGSAASTGESESNASNGRKKDMKCPVNEVDETVSQSSLDQGKTVQSKANFSKRSPEETEMIKVGDTGSGSCFSIVQNSSSIEEGGFRLISDDLSKRKKPRWDTSSFSNNINFQQPNSSRSSSIEEPDPEVIAQMKEMIYRAAAFRPVNFGLDGAEKPKRKNVRISTDPQTVAARHRRERISERIRVLQKLVPGGSKMDTASMLDEAANYLKFLRSQVKALECLGNKVDAMNCPPTSIAFSFNPSFPMQTSLSHIHHSQG 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00265 453 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 167 443 IPR045843 GO:0003700|GO:0006355
Phco1g00265 453 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 358 407 IPR011598 GO:0046983
Phco1g00265 453 SMART finulus 364 413 IPR011598 GO:0046983
Phco1g00265 453 MobiDBLite consensus disorder prediction 291 319 - -
Phco1g00265 453 MobiDBLite consensus disorder prediction 225 252 - -
Phco1g00265 453 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 363 417 IPR036638 GO:0046983
Phco1g00265 453 MobiDBLite consensus disorder prediction 297 318 - -
Phco1g00265 453 Pfam Helix-loop-helix DNA-binding domain 368 407 IPR011598 GO:0046983
Phco1g00265 453 Gene3D - 363 417 IPR036638 GO:0046983
Phco1g00265 453 MobiDBLite consensus disorder prediction 225 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00265 Phco-Chr1 1902805 1904166 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco1g00265 HLH 3.1e-05 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00265 1 1902805 1904166 Phco1g00265 1 1902805 1904166 ECH
Phco10g01845 10 40653973 40658956 Phco1g00265 1 1902805 1904166 PCT