Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00261 ATGGCGACGGCGCCGGGAAACCAAATGCTGGAGGGAGGACCGCCGCCGCTTCCGGGGACCGATATGACCGGAATATGCTTCCGAGACCAGCTCTGGCTCAACAGCTTTCCTCTCGATCGCAACCTTGTCTTTGATTACTTCGCCCTGTCCCCTTTCTACGATTGGACTTGCAACAACGAGCAACTCCGTATGCGCTCCGTTCACCCCCTCGACCTCTCTCAGCTCTCGAAAATGACGGGGACGGAGTATATGCTCAGCGAAGTTATGGAGCCGCACCTGTTTGTTATTCGCAAGCAGAAGAGAGATAGCCCCGACAAGGTTACGCCTATGCTCGCCTACTACGTCCTTGACGGTTCTATTTACCAGGCTCCGCAACTCTGCAATGTTTTTGCTGCCAGAATTGGAAGGGCCCTTTATTACATACAAAAGGCATTTACTACAGCTGCCTCAAAGTTGGAGAAGATTGGATATGCTGCGGATTCTGAAAATGAGACTGCATTGGTGGAGTCAAAGACTGCTAAGGAGACAATTGATATAAAGGAAGTTAAGCGTGTGGATCATATTCTTGCATCCTTGCAACGCAAGTTACCACCAGCTCCGCCTCCACCACCATTTCCAGAAGGGTATGTGCCCCCTCCAACAGCTGAAGCTGAGAAAGGCACCGAAACTCAGGAAGCAGCAGAAACGCAAGCTCCTACTGCTGATCCCATAATTGATCAAGGACCAGCAAAAAGAATGAAATTTTAA 747 0.502 MATAPGNQMLEGGPPPLPGTDMTGICFRDQLWLNSFPLDRNLVFDYFALSPFYDWTCNNEQLRMRSVHPLDLSQLSKMTGTEYMLSEVMEPHLFVIRKQKRDSPDKVTPMLAYYVLDGSIYQAPQLCNVFAARIGRALYYIQKAFTTAASKLEKIGYAADSENETALVESKTAKETIDIKEVKRVDHILASLQRKLPPAPPPPPFPEGYVPPPTAEAEKGTETQEAAETQAPTADPIIDQGPAKRMKF 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00261 248 Pfam MED6 mediator sub complex component 25 150 IPR007018 GO:0003712|GO:0006357|GO:0016592
Phco1g00261 248 Gene3D Mediator complex, subunit Med6 19 148 IPR038566 -
Phco1g00261 248 PANTHER MED-6-RELATED 3 248 IPR007018 GO:0003712|GO:0006357|GO:0016592
Phco1g00261 248 MobiDBLite consensus disorder prediction 194 248 - -
Phco1g00261 248 PIRSF MED6_meta/plant 12 248 IPR016820 GO:0003712|GO:0006357|GO:0016592
Phco1g00261 248 FunFam Mediator of RNA polymerase II transcription subunit 6 19 148 - -
Phco1g00261 248 MobiDBLite consensus disorder prediction 195 211 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MED6 Phco1g00261 Med6 9e-42 No_clan