Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00240 ATGATTCTGGTGAGAAAACCCCATTGGGGGTTGCTTCTTTTTCTTCTCCACCTTCACTGCCGCACCTGTCACTCTACAGAACCTATGAACTGTACGGACACAAGCCGCGTTTGCACTTCTTTCATGGCCTTCAAACCTGGACCAAACCAAACGCTTGCTCTGATTCAGAGCATGTTTGATGTGCTGCCTGGTGACATCACAGTTGAAGGTAACAGGCGGGGTTACATGTTCATAAGGAAGAATTGTTCTTGTGCTACGGGTATCAAGGAATACTTGTCCAATACCACCTTCACTGTGAAATCCAATGAGGGGTTGGTGTATGACGTGGTGATAAATGCCTATGATGGCCTTGCTTTCCTTCCCAACACCACCAGGAGGGCCAGGAATGGTGCTGTTGTGTCTCTGAGGTTGTTTTGTGGATGCTCCAGTGGACTGTGGAACTATTTGGTCAGTTATGTGATGAGAGATGGGGATACTGTTGGGTCCTTGGCAAGCAGGTTTGGGGTTAGCATGGATAGCATCGAGAGTGTGAATGGCATTAGTAATCTGGATAATGTCACAGTTGGTTCACTTTATTATATACCACTTGATTCTGTTCCTGGTGATCCTTATCCCCTGAATAATGCTGCTCCACCAGTTCCTGTTCCTGCCCCATCCTTTGATAATTTTTCAGCTGATCAGGTCAACCACAAGGCTCGTGTACCCTTCGGATGGATCATTGGGGGCTTAGGAGTTGGTCTACTTCTAATAATATTAACTGTGATTCTCTGTGTTTGTATGAGATCATCAAATTGTTTTGCTGATGATGCCAGAACTCATGAGAAAGATGCTGAGGGCAAGATTTCTCATAAATTCCATATTCTAAGGAACCCAAGTTTTTTTTGTGGTTCTGGAAGGTACATATGTGGCAAGCATGTTGAACAGAAGCAAACAGATGCTGAATCCAGCAATCACACGGTTACCATTCCAAAAGCCTCAACTCTTGGGCCTGATGTATTTGAAATGGATAAGCCTGTTATTTTTACGTATGAAGAGATTTTCTCCACATCTGATGGTTTCTCTGATTCAAATCTACTTGGGCATGGAACGTATGGTTCTGTTTATTATAGCCTCCTTCGTGATCAGGAAGTTGCTATTAAAAGAATGACTGCTACTAAAACAAAAGAATTTTTGTCAGAGATGAAAGTTTTGTGCAAGGTTCATCATGCTAATCTGGTAGAATTGATTGGCTATGCAGCTAGTCACGAGGAGCTTTTCCTAGTTTATGAATATGCTCAGAAGGGTTCACTTAGAAGCCATTTGCATGATCCTAATAGTAAGGGCCATTCCCCACTTTCTTGGATCATGAGGGTGCAGATTGCGCTTGATGCTGCTAGGGGCCTCGAATACATACACGAGCACACAAAAACTCATTATGTACACCGAGATATCAAAACCAGTAACATATTACTTGATGCTTCCTTTAGAGCAAAGATTTCAGATTTTGGGTTAGCAAAACTTGTTGGGAAAACAAATGATGGAGAAATATCAACTACCAAAGTTGTTGGTACATATGGATATCTTGCCCCAGAATATTTGAGTGAGGGTCTTGCGACAGCTAAAAGTGATGTCTATGCATTTGGCGTTGTCCTTTTTGAGATTATATCAGGAAAGGAGGCCATCATTAGATCAGAAGGCACAACGACAAAAAATCCTGAAAGACGTTCTCTGGCATCTATAATGCTGGGAGTTCTTAGGAATTCGCCTGATTCCATGAGCATGTCAAGCTTGAGAGATTATATTGATCCAAATATGATGGATTTGTATCCCCATGATTGTGTATTTAAGATGGCCACACTGGCAAAGCAATGTGTGGATGAGGACCCCATCTTACGACCCGATATGAGACAAGTTGTGATTTCCCTCTCACAGATTCTCCTTTCTTCTATTGAGTGGGAAGCAACTCTAGCTGGGAATAGCCAGGTTTTCAGTGGCCTTGTTCAGGGAAGATAG 1992 0.4267 MILVRKPHWGLLLFLLHLHCRTCHSTEPMNCTDTSRVCTSFMAFKPGPNQTLALIQSMFDVLPGDITVEGNRRGYMFIRKNCSCATGIKEYLSNTTFTVKSNEGLVYDVVINAYDGLAFLPNTTRRARNGAVVSLRLFCGCSSGLWNYLVSYVMRDGDTVGSLASRFGVSMDSIESVNGISNLDNVTVGSLYYIPLDSVPGDPYPLNNAAPPVPVPAPSFDNFSADQVNHKARVPFGWIIGGLGVGLLLIILTVILCVCMRSSNCFADDARTHEKDAEGKISHKFHILRNPSFFCGSGRYICGKHVEQKQTDAESSNHTVTIPKASTLGPDVFEMDKPVIFTYEEIFSTSDGFSDSNLLGHGTYGSVYYSLLRDQEVAIKRMTATKTKEFLSEMKVLCKVHHANLVELIGYAASHEELFLVYEYAQKGSLRSHLHDPNSKGHSPLSWIMRVQIALDAARGLEYIHEHTKTHYVHRDIKTSNILLDASFRAKISDFGLAKLVGKTNDGEISTTKVVGTYGYLAPEYLSEGLATAKSDVYAFGVVLFEIISGKEAIIRSEGTTTKNPERRSLASIMLGVLRNSPDSMSMSSLRDYIDPNMMDLYPHDCVFKMATLAKQCVDEDPILRPDMRQVVISLSQILLSSIEWEATLAGNSQVFSGLVQGR 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00240 663 SMART LysM_2 151 195 IPR018392 -
Phco1g00240 663 SUPERFAMILY Protein kinase-like (PK-like) 331 635 IPR011009 -
Phco1g00240 663 Pfam Protein tyrosine and serine/threonine kinase 357 633 IPR001245 GO:0004672|GO:0006468
Phco1g00240 663 SMART serkin_6 353 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g00240 663 Pfam LysM domain 152 189 IPR018392 -
Phco1g00240 663 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672|GO:0006468
Phco1g00240 663 SUPERFAMILY LysM domain 150 195 IPR036779 -
Phco1g00240 663 ProSiteProfiles LysM domain profile. 150 194 IPR018392 -
Phco1g00240 663 FunFam Kinase family protein 328 424 - -
Phco1g00240 663 Gene3D Phosphorylase Kinase; domain 1 329 424 - -
Phco1g00240 663 Gene3D Transferase(Phosphotransferase) domain 1 426 649 - -
Phco1g00240 663 Gene3D LysM domain 147 200 IPR036779 -
Phco1g00240 663 ProSitePatterns Protein kinases ATP-binding region signature. 359 380 IPR017441 GO:0005524
Phco1g00240 663 FunFam PTI1-like tyrosine-protein kinase 3 425 649 - -
Phco1g00240 663 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 57 657 IPR044812 GO:0019199|GO:0045087
Phco1g00240 663 ProSiteProfiles Protein kinase domain profile. 353 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00240 Phco-Chr1 1691000 1697426 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Phco1g00240 PK_Tyr_Ser-Thr 8e-50 CL0016