Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00234 ATGATAGCATGGGGTCACAAGTCCTTGGCACCACTTAAGAGGAGAGACCTCTCTGATCCCAATCAAGGCAAAAAACAGAGGAGGAATCGAGAGAGAAAAAGGAGGGAAGTTTCAGTTATTTTCCTTTGCTTCTCCTCAAAACTCTCTTTCTCTTCATTTCTCCCTCCCTTTGGTGTCAACTCACTCACTCATCCAACCGCAACTCGCTCTCTGTCACACACTTGTTTCATCAATATCATGTTCTCCTCCAATGCATACTCCTTCATGTTTTCGTGTGAACTTTACCCACAGTGCAAGTCGGGCATAGGTAGGTGGTCTTCGTGTAGTGACTTCTCAGCTTCACAGAGGAGGCGTTCTGCTCCATCGAGAGTGACGTGTTGTGCTCCAACTTCGAGCAGCGGCAAAACTCACGGCGGCTTTGTGATGGAGGATGAGGCCAATGGGACTTCCACGGAGGTCAACGAAAGCCCAATCACCGGCGGCGGCGTCCGGGACGTGTACGGCGAGGATAAAGCCACTGAGGATCAGGGTGTGACTCCGTGGAATGTCTCTGTTTCTTGTGGATATACTTTGTTGAGAGATCCTCACTTCAACAAAGGACTCGCCTTCACTGATAAAGAGAGGGACTCCCACTACTTGCGTGGCCTTCTTCCCCCATCTGTTCTTTCTCAAGAAACTCAGGTAAAGAAAATGATCCAACTCATACGCCAGTATGAAGTTCCATTGCACAAGTTCGTGGCAATGATGGATCTTCAGGGGAGAAATGAAAGATTGTTCTATAGGCTTCTTCTTGATCATGTTGAGGAGTTACTACCAGTTGTCTATACTCCAACTGTTGGTGAAGCATGCCAGAAATATGGGAATATCTTCATGCATCCTCAGGGACTTTATATAAGTTTGAAGGATAAAGGGAGAATTCTTCAAGTACTAAGGAATTGGCCTGAGAGGAACATTCAGGTCATTGTTGTAACTGATGGAGAGAGAATTCTGGGCCTTGGGGATCTTGGTTGTCAGGGAATGGGAATACCGGTAGGAAAACTCTCTTTATATACAGCACTTGGTGGAGTTCGTCCTTCTTCTTGCTTGCCTATTACCATCGATGTGGGTACAAACAATGAGAATTTGTTGAATGAAGAATTATATATAGGACTCAAGCATAAACGGGCAACTGGGCAGGAATATGCTGAGCTTCTGCATGAATTTATGAATGCAGTCAAGCAGAATTATGGTGAAAAAATCCTTGTTCAGTTTGAAGACTTTGCAAACCACAATGCCTTTGATCTACTTGAAAAATATAGGTCAACACATCTTGTCTTTAATGATGATATTCAGGGAACAGCAGCAGTGGTTCTTGCAGGACTAATTGCTGCTCTGAAAGTGGTTGGGGGAGACTTGCCTGATCACAGGTTCTTATTCCTTGGTGCTGGAGAGGCTGGCACTGGAATAGCAGAACTCATAGCACTTGAAACTTCAAAACGGACAAATCTCCCAGTAGAAGAAATGCGCAAGAACATTTGGTTGGTGGACTCAAAGGGCTTGATTGTGGATTCCCGCAAAGAATCACTTCAACATTTTAAGAGACCCTGGGCTCATGAACATGAACCTGTTGAGGAACTTGTAGATGCTATTAATCAAATTAAGCCAACAGTTTTAATTGGAACATCAGGACGAGGGAGAACTTTTACCAAGGAAGTGATTGAAGCTATGGCTTCCTTGAATGAGAAACCTGTTATTCTTTCCCTTTCCAACCCCACATCACAGTCAGAATGCACTGCTGAAGAAGCTTACACTTGGAGCCAGGGACGTGCCATTTTTGCTAGTGGGAGCCCTTTTGACCCAGTTGAATATGATGGAAAAGTGTTCATGCCTGGCCAGTCCAATAATGCGTACATTTTTCCTGGATTTGGTCTTGGTTTAATAATGTCTGGAACCATTCGTGTCCATGATGACATGCTTCTGGCAGCTGCTGAAGCTTTGGCTTCACAGGTGACTGAGGAGGACTATGACAAGGGGCTCATATACCCTCCCTTCGCCAACATCAGAAAGATTTCAGCACATATAGCTGCCAAAGTGGCTGCTAAGGCCTATGAGCTTGGCTTGGCCACTAACATTCCTCAGCCAAAAGATTTGATGAAGTTTGCTGAGAGCTCTATGTATACACCAGCCTATAGAGACTACCGGTGA 2184 0.4501 MIAWGHKSLAPLKRRDLSDPNQGKKQRRNRERKRREVSVIFLCFSSKLSFSSFLPPFGVNSLTHPTATRSLSHTCFINIMFSSNAYSFMFSCELYPQCKSGIGRWSSCSDFSASQRRRSAPSRVTCCAPTSSSGKTHGGFVMEDEANGTSTEVNESPITGGGVRDVYGEDKATEDQGVTPWNVSVSCGYTLLRDPHFNKGLAFTDKERDSHYLRGLLPPSVLSQETQVKKMIQLIRQYEVPLHKFVAMMDLQGRNERLFYRLLLDHVEELLPVVYTPTVGEACQKYGNIFMHPQGLYISLKDKGRILQVLRNWPERNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSSCLPITIDVGTNNENLLNEELYIGLKHKRATGQEYAELLHEFMNAVKQNYGEKILVQFEDFANHNAFDLLEKYRSTHLVFNDDIQGTAAVVLAGLIAALKVVGGDLPDHRFLFLGAGEAGTGIAELIALETSKRTNLPVEEMRKNIWLVDSKGLIVDSRKESLQHFKRPWAHEHEPVEELVDAINQIKPTVLIGTSGRGRTFTKEVIEAMASLNEKPVILSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPVEYDGKVFMPGQSNNAYIFPGFGLGLIMSGTIRVHDDMLLAAAEALASQVTEEDYDKGLIYPPFANIRKISAHIAAKVAAKAYELGLATNIPQPKDLMKFAESSMYTPAYRDYR 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00234 727 ProSitePatterns Malic enzymes signature. 439 455 IPR015884 GO:0004471
Phco1g00234 727 MobiDBLite consensus disorder prediction 13 32 - -
Phco1g00234 727 Gene3D - 441 727 - -
Phco1g00234 727 Gene3D - 186 440 IPR037062 GO:0004471
Phco1g00234 727 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 175 442 IPR046346 -
Phco1g00234 727 MobiDBLite consensus disorder prediction 147 167 - -
Phco1g00234 727 FunFam Malic enzyme 441 727 - -
Phco1g00234 727 Pfam Malic enzyme, NAD binding domain 443 695 IPR012302 GO:0051287
Phco1g00234 727 SMART Malic_M_2 443 696 IPR012302 GO:0051287
Phco1g00234 727 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 443 726 IPR036291 -
Phco1g00234 727 Pfam Malic enzyme, N-terminal domain 252 433 IPR012301 GO:0004471
Phco1g00234 727 FunFam Malic enzyme 186 440 - -
Phco1g00234 727 SMART malic_2 252 433 IPR012301 GO:0004471
Phco1g00234 727 CDD NAD_bind_1_malic_enz 443 721 - -
Phco1g00234 727 PRINTS Malic enzyme signature 470 486 IPR001891 GO:0004470|GO:0004471
Phco1g00234 727 PRINTS Malic enzyme signature 439 455 IPR001891 GO:0004470|GO:0004471
Phco1g00234 727 PRINTS Malic enzyme signature 258 282 IPR001891 GO:0004470|GO:0004471
Phco1g00234 727 PRINTS Malic enzyme signature 354 376 IPR001891 GO:0004470|GO:0004471
Phco1g00234 727 PRINTS Malic enzyme signature 573 589 IPR001891 GO:0004470|GO:0004471
Phco1g00234 727 PRINTS Malic enzyme signature 414 432 IPR001891 GO:0004470|GO:0004471
Phco1g00234 727 PRINTS Malic enzyme signature 318 347 IPR001891 GO:0004470|GO:0004471
Phco1g00234 727 PANTHER MALIC ENZYME-RELATED 153 726 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00234 Phco-Chr1 1658560 1665173 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00234 1 1658560 1665173 Phco1g00234 1 1658560 1665173 ECH
Phco4g03511 4 55193572 55201225 Phco1g00234 1 1658560 1665173 ECH
Phco7g00959 7 7787447 7792043 Phco1g00234 1 1658560 1665173 ECH
Phco1g00234 1 1658560 1665173 Phco7g00959 7 7787447 7792043 ECH
Phco1g00234 1 1658560 1665173 Phco6g02432 6 45737197 45738394 ECH
Phco1g00234 1 1658560 1665173 Phco3g02626 3 52920082 52921658 ECH