LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco1g00228	ATGCCGGTGCTTCGTAACGGAGCGAGCAGGGGCCGGGGAGCAGCGAAACAACAGGAGCGGCAACAGGGTCCAGCGGCGGAAGGGGAGGCGATTGCGACGAGGACCCGGAGGCGGCGTGCGGCGGCGGCGGCGGCAGCAGTGCCGAAGAGTAACAACAACAACAACGACGACGAAAACAATAAGCACAAGCAGCAACAGCAGCACCAGCCGGAGCAGGTGGTGGTGGTAAATGAGAAAGTAGTTGTTGCGGCGAAGGAAGAAGAGAATCGGGGATTGGGGGAAGGTGTTGGGGCGGGTGGAGCGGAGAGGGAAGAGGTAGGCGAGAAAGAGATGGTTGGATATGACAGTGGAGGTCGAAGCAATGATAAAGCCAATGCCGGTGCTGAAGATGACGCCAATACTCCCGAGGTTCCTCAGAAGATTCAAGTAGGTAATTCCCCTTCTTATAAAGTAGAAAGAAAACTTGGTAAGGGTGGATTTGGTCAGGTATATGTTGGACGACGTTGTAGTGGAAATTTGAATGAGAGAACTGGACCTGGAGCTGTAGAGGTTGCATTAAAACTTGAGCATAGAACTAGTAAAGGATGTACCTATGGACCACCCTACGAGTGGCAAGTGTACAACACTCTCGGTGGCAGTCATGGTGTGCCACAAGTACACTACAAGGGAAAGCAGGGCGACTATTATGTCATGGTTATGGATATACTGGGACCTAGCCTGTGGGATGTTTGGAATAACAATAACTCTCATGCCATGTCCACTGAAATGGTTGCTTGTATTGCCATTGAAGCAATATCAATATTGGAAAAAATGCACTCTCGAGGATATGTGCACGGGGATGTGAAGCCTGAAAATTTTCTGCTTGGTCCTCCTGGGACGTCTGATGAGAAAAAATTGTTCCTTGTAGATCTTGGATTAGCTACTAAGTGGAGAGATAGTACAACAGGCTCACATGTGGAATATGATCAAAGGCCAGATGTTTTTAGAGGCACAGTCCGCTATGCTAGTGTTCATGCACATTTAGGGAGAACTGCAAGCAGGAGGGATGACTTGGAATCTCTTGCATATACATTGATTTTCCTTCTCCGAGGTCGCCTTCCTTGGCAGGGATTCCAGGGAGAAAACAAAGGTTTCCTAGTTTGCAAGAAGAAGATGGGAACATCTCCAGAGATTATTTGCTGCTTTTGTCCCCAACCTTTTAAGCTGTTTGTTGAACATGTTGTGAACTTAAAGTTTGATGAAGAACCCAATTATGCAAAATACATTTCTTTATTTGATGGGATTGTTGGTCCTAACCCAGATATTAGACCAATTAATACAGAAGGTGCACAAAAGCTCATTGGTCATAAGAGAGGCCGATTAGCTATGGAAGAAGAGGATGATGACCAGCCAAAAAAGAAGATTCGTATAGGTTTGCCAGCATCCCAGTGGATAAGTGTTTATAATGCTCGTAGACCAATGAAACAAAGATATCACTATAATGTATCAGATGCAAGGTTATCCCAGCACATTGAGAAAGGAAATGAGGATGGCTTATATATTAGCAGTGTTGCTTCATGTCAGAACGTATGGGCATTAATCATGGATGCAGGGACAGGTTTCGCTGGCCAAGTGTACGAGCTCTCACCCTTCTTTCTCCATAAGGAATGGATTGTGGAGCAATGGGAACTAGGTTACTACATCAGCGCAATTGCTGGAGCTGCAAATGGGAGCTCGCTAGTAGTAATGTCCAAGGGCACACAGTTTGTGCAGCAATCATACAAAGTCAGTGATTCATTTCCTTTTAAGTGGATTAACAAAAAGTGGAGGGAGGGGTTTTACGTGACTTCAATGGCCACCTCAGGGCCGAGATGGGGAGTCGTCATGTCTCGTGGTGCAGGATATTCAGACCAGGTTATTGAACTAGACTTTCTGTATCCTAGTGAGGGGATTCACAAGCGGTGGGATAGCGGTTACAGAATCACATCTACTGCTGCAACTTGGGACCAAGCTGCTTTTGTCCTGAGCGTGCCAAGGAGGAAGCCTGCAGACGAAACTCAGGAAACACTTAGGACTTCTGCTTTTCCCAGTACACATGTCAAGGAGAAGTGGGCTAAGAACCTCTACATTGCTTCTATTTGCTACGGACGTACAGTTTCTTGA	2142	0.4664	MPVLRNGASRGRGAAKQQERQQGPAAEGEAIATRTRRRRAAAAAAAVPKSNNNNNDDENNKHKQQQQHQPEQVVVVNEKVVVAAKEEENRGLGEGVGAGGAEREEVGEKEMVGYDSGGRSNDKANAGAEDDANTPEVPQKIQVGNSPSYKVERKLGKGGFGQVYVGRRCSGNLNERTGPGAVEVALKLEHRTSKGCTYGPPYEWQVYNTLGGSHGVPQVHYKGKQGDYYVMVMDILGPSLWDVWNNNNSHAMSTEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGPPGTSDEKKLFLVDLGLATKWRDSTTGSHVEYDQRPDVFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLLRGRLPWQGFQGENKGFLVCKKKMGTSPEIICCFCPQPFKLFVEHVVNLKFDEEPNYAKYISLFDGIVGPNPDIRPINTEGAQKLIGHKRGRLAMEEEDDDQPKKKIRIGLPASQWISVYNARRPMKQRYHYNVSDARLSQHIEKGNEDGLYISSVASCQNVWALIMDAGTGFAGQVYELSPFFLHKEWIVEQWELGYYISAIAGAANGSSLVVMSKGTQFVQQSYKVSDSFPFKWINKKWREGFYVTSMATSGPRWGVVMSRGAGYSDQVIELDFLYPSEGIHKRWDSGYRITSTAATWDQAAFVLSVPRRKPADETQETLRTSAFPSTHVKEKWAKNLYIASICYGRTVS	713

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco1g00228	713	ProSiteProfiles	Protein kinase domain profile.	149	452	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phco1g00228	713	PANTHER	CASEIN KINASE-RELATED	143	679	-	-
	Phco1g00228	713	FunFam	casein kinase 1-like protein HD16	121	469	-	-
	Phco1g00228	713	Pfam	Protein kinase domain	149	383	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phco1g00228	713	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	276	288	IPR008271	GO:0004672\|GO:0006468
	Phco1g00228	713	Gene3D	Transferase(Phosphotransferase) domain 1	115	468	-	-
	Phco1g00228	713	CDD	STKc_CK1	149	425	-	-
	Phco1g00228	713	ProSitePatterns	Protein kinases ATP-binding region signature.	155	187	IPR017441	GO:0005524
	Phco1g00228	713	SUPERFAMILY	Protein kinase-like (PK-like)	148	429	IPR011009	-
	Phco1g00228	713	MobiDBLite	consensus disorder prediction	101	116	-	-
	Phco1g00228	713	MobiDBLite	consensus disorder prediction	1	146	-	-
	Phco1g00228	713	SMART	serkin_6	149	447	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco1g00228	Phco-Chr1	1613382	1618628	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CK1_CK1-Pl	Phco1g00228		Pkinase	6.2e-16	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco1g00228	1	1613382	1618628	Phco1g00228	1	1613382	1618628	ECH