Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00225 ATGTCCTGCAAGGATGGTAGCAAAAACGGAATGGATAACGGGAAGTATGTCCGTTACACACCTGAGCAGGTTGAAGCCTTGGAGAGGCTCTATCACGATTGTCCCAAACCGAGTTCCATTCGCCGCCAGCAACTCATACGCGAGTGCCCCATTCTCTCCAACATTGAGCCCAAACAAATCAAGGTTTGGTTCCAGAACAGAAGATGTAGAGAGAAGCAGAGAAAGGAGTCGTCGCGGCTGCAAGCCGTAAATAGGAAGTTGACTGCGATGAACAAGCTGCTGATGGAGGAGAACGATAGGTTGCAGAAACAGGTGTCTCAACTGGTGTATGAAAATGGTTATTTTCGGCAACACACCCAAAATACTACGCAGGCAACCAAAGACACAAGTTGTGAATCAGCGGTGACGAGTGGTCAGCACAGTTTGACAACTCAACATCCCCCACGGGAAGCGAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAGACTTTAGCAGAATTTCTTTCTAAGGCTACTGGGACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCTCTGGTGTGGCAGCAAGAGCTTGTGGTCTAGTGGGACTAGAGCCCACTAGGGTTGCAGAAATCCTCAAAGATCGGCCACTGTGGTTTCGCGATTGCCGAGCTGTTGATGTTCTCAATGTGCTGCCCACAGCAAATGGTGGAACCATCGAGCTGCTTTATATGCAGCTATATGCACCAACTACATTGGCACCTGCCCGAGATTTCTGGTTGTTGCGCTATACTTCTGTTCTAGAAGATGGAAGTCTAGTGATCTGTGAGAGGTCTCTTAAAAATACTCAAAATGGTCCAAGCATGCCTACTGTGCAACACTTTGTTAGGGCAGAGATGCTGCCTAGTGGGTACTTAATCAGACCTTGTGAAGGAGGTGGTTCCATCATCCATATTGTTGATCATATGGATTTAGAGCCATGGAGTGTACCAGAAGTGCTACGGCCACTGTACGAATCATCAACAGTGCTGGCTCAGAAGACAACTATGGCGGCCCTACGTCATTTAAGGCAGATCTCACATGAAGTTTCTCAGTCTAATGTCACTGGGTGGGGTAGACGACCAGCAGCCCTACGAGCTCTTAGCCAAAGATTGAGCCGGGGTTTCAATGAGGCACTCAATGGGTTCACTGATGAGGGATGGACAACAATTGGCAATGATGGTGTAGATGATGTTACTATTCTAGTGAATTCATCCCCTGACAAATTAATGGGTCTGAATCTCCCCTTTACCAACGGATTTCCTTCTGTCAGTAATGCAGTGCTATGTGCCAAAGCATCCATGCTATTACAGAATGTGCCCCCTGCCATTCTCCTAAGGTTCCTGCGGGAGCATAGATCTGAATGGGCAGACAACAATATGGATGCTTACACAGCTGCTGCTATTAAAGTTGCTCCATGCAGCTTATCAGGATCTCGTGTTGGAAATTATGGAGGTCAAGTTATACTCCCTCTAGCACACACAATTGAGCATGAAGAGTGTTTGGAAGTCATTAAATTGGAAGGAGTTGCTCATTCTCCTGAAGACACGATAATGCCCAGAGAAATGTTTCTCTTACAACTCTGCAGTGGAATGGATGAGAATGCTGTGGGCACCTGTGCTGAACTTATATCTGCTCCAATTGATGCTTCTTTTGCTGATGATGCCCCCCTTCTACCTTCTGGATTTCGCATTATTCCTCTTGAATCTGGAAAGGAAGCTTCCAGCCCCAATCGCACCCTTGACCTTGCATCCGCCCTTGACATTGGCCCTAGTGGAAACCGAGCCTCAAATGAATGTGCTGGAAATTCCAGCTGTATGAGATCTGTGATGACAATAGCATTTGAATTTGCATTTGAAAGCCATATGCAAGAGCATGTAGCATCTATGGCTCGCCAATATGTTCGGAGCATTATATCATCAGTCCAAAGGGTAGCATTAGCACTTTCTCCTTCTCATTTGAGTTCACATGCAGGGCTCAGGTCACCATTGGGCACTCCTGAAGCACAAACCCTTGCTCACTGGATCTGCAACAGTTACAGGTGCTACTTGGGTGTGGAGTTACTCAAATCTAACAACGAGGGGGATGAATCTTTGCTTAAGTCCTTGTGGCATCACTCAGATGCAATATTGTGCTGCACTCTGAAGGCTTTGCCAGTGTTCACTTTCTCGAACCAAGCTGGGCTTGACATGCTGGAGACCACCCTAGTTGCATTACAAGATATATCTTTGGAGAAAATATTTGATGATCATGGACGAAAAGTTCTCTTTTCAGAGTTTCCACAGATTATTCAACAGGGTTTTGCATGTCTCCAAGGTGGTATTTGTCTTTCAAGCATGGGGCGACCCGTCTCATACGAGAGAGTTGTTGCTTGGAAGGTGCTGAATGAAGAAGAGAATGCTCATTGTATTTGCTTTATGTTTATGAACTGGTCTTTTGTTTGA 2511 0.4636 MSCKDGSKNGMDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQNTTQATKDTSCESAVTSGQHSLTTQHPPREASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCSGVAARACGLVGLEPTRVAEILKDRPLWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICERSLKNTQNGPSMPTVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMAALRHLRQISHEVSQSNVTGWGRRPAALRALSQRLSRGFNEALNGFTDEGWTTIGNDGVDDVTILVNSSPDKLMGLNLPFTNGFPSVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYTAAAIKVAPCSLSGSRVGNYGGQVILPLAHTIEHEECLEVIKLEGVAHSPEDTIMPREMFLLQLCSGMDENAVGTCAELISAPIDASFADDAPLLPSGFRIIPLESGKEASSPNRTLDLASALDIGPSGNRASNECAGNSSCMRSVMTIAFEFAFESHMQEHVASMARQYVRSIISSVQRVALALSPSHLSSHAGLRSPLGTPEAQTLAHWICNSYRCYLGVELLKSNNEGDESLLKSLWHHSDAILCCTLKALPVFTFSNQAGLDMLETTLVALQDISLEKIFDDHGRKVLFSEFPQIIQQGFACLQGGICLSSMGRPVSYERVVAWKVLNEEENAHCICFMFMNWSFV 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00225 836 Pfam Homeodomain 15 73 IPR001356 GO:0003677
Phco1g00225 836 Gene3D - 193 374 IPR023393 -
Phco1g00225 836 CDD homeodomain 15 75 IPR001356 GO:0003677
Phco1g00225 836 Pfam MEKHLA domain 693 835 IPR013978 -
Phco1g00225 836 ProSiteProfiles 'Homeobox' domain profile. 10 74 IPR001356 GO:0003677
Phco1g00225 836 CDD bZIP 67 106 - -
Phco1g00225 836 SMART START_1 158 368 IPR002913 GO:0008289
Phco1g00225 836 Pfam START domain 159 367 IPR002913 GO:0008289
Phco1g00225 836 MobiDBLite consensus disorder prediction 120 148 - -
Phco1g00225 836 CDD START_ArGLABRA2_like 153 368 - -
Phco1g00225 836 SMART HOX_1 12 78 IPR001356 GO:0003677
Phco1g00225 836 ProSiteProfiles START domain profile. 149 363 IPR002913 GO:0008289
Phco1g00225 836 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 11 836 IPR044830 GO:0003700
Phco1g00225 836 SUPERFAMILY Bet v1-like 158 368 - -
Phco1g00225 836 SUPERFAMILY Homeodomain-like 14 76 IPR009057 -
Phco1g00225 836 FunFam homeobox-leucine zipper protein ATHB-15 194 375 - -
Phco1g00225 836 MobiDBLite consensus disorder prediction 120 151 - -
Phco1g00225 836 SUPERFAMILY Bet v1-like 395 594 - -
Phco1g00225 836 Coils Coil 80 111 - -
Phco1g00225 836 Gene3D - 6 81 - -
Phco1g00225 836 FunFam Homeobox-leucine zipper protein REVOLUTA 15 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00225 Phco-Chr1 1585159 1592320 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phco1g00225 START 1.7e-54 CL0209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00225 1 1585159 1592320 Phco1g00225 1 1585159 1592320 ECH
Phco10g01877 10 40943495 40949792 Phco1g00225 1 1585159 1592320 PCT