Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00224 ATGGAAGCGCCGGAGTACTTCGTCGGAGGCTATTATGCGCCCGGAGGAGCTGACCAATTCTCTCAACCGGAGAAGCGCCACGCCGACCAGAAAATCGGTGAGCCTTTCGCCATTGATGATCTCCTCGACTTCTCCCACGCCGACGCCATTATGTCCGACGCTTTCTTCGACAATGTAGCCGGGAACTCCACGGAGTCCTCCACCGTCACCGCTGTTGACAGCTGCAACTCCTCAATTTCCGGAAGTGACAACCGCTTCGCCGCAGCCATTGTCCCTCGCGGCTTCATCGGCGATCCTCAATTCTCCGGAGAACTCTGCGTTCCGTACGATGATATGGCGGAATTGGAATGGCTCTCGAACTTCGTTGAAGACTCGTTCTCCGCCGAGGAGGAGTTGAAGACGCTGCAGCTACTCTCCGGCGCCGCGCCGTCCACCGCCATTGGTGCGAAACCGCAGACGCCGGAGTCCTCATCCTCCACCGACACGCTGCCGCCGTTCGCTTCCGACGAAACCGCTCGAAACGCACCGTTTCTCCACTCGGAGACACCTCTTCCGGGGAAGGCGCGGAGCAAGCGCTCACGCGCGGCGCCGGGGGACTGGTCCACCCGCCTGCTCCACCTAGTGGCGCCGGAGCAAGAGAAGCTGCCGCAGGCGAAGGCGTCACCGGTGAAGAAGAGAGAGGGAACGAATGCAGAGTGTTCCGGACGGAAATGCCTGCACTGTGGCGCTGAGAAGACGCCGCAGTGGCGGACGGGACCGATGGGACCGAAAACGCTGTGCAACGCGTGTGGCGTGAGGTTCAAGTCCGGGAGGCTTGTGCCGGAGTACCGGCCGGCGGCGAGCCCGACATTCATGTCGACGAAGCATTCGAATTCGCATCGGAAGGTTTTGGAGTTGAGGCGGCAGAAGGAGCTACAGCGACATCAGCATCAGCAACTGATGAGTCAGAGTTCAATTTTCGGCGTATCCAACGGTGGAGATGAGTTCTTGATCCATCCTCATCATCACCATCATCATTGTGGGCCAGATTTTAGACACGTTATTTAG 1047 0.5922 MEAPEYFVGGYYAPGGADQFSQPEKRHADQKIGEPFAIDDLLDFSHADAIMSDAFFDNVAGNSTESSTVTAVDSCNSSISGSDNRFAAAIVPRGFIGDPQFSGELCVPYDDMAELEWLSNFVEDSFSAEEELKTLQLLSGAAPSTAIGAKPQTPESSSSTDTLPPFASDETARNAPFLHSETPLPGKARSKRSRAAPGDWSTRLLHLVAPEQEKLPQAKASPVKKREGTNAECSGRKCLHCGAEKTPQWRTGPMGPKTLCNACGVRFKSGRLVPEYRPAASPTFMSTKHSNSHRKVLELRRQKELQRHQHQQLMSQSSIFGVSNGGDEFLIHPHHHHHHCGPDFRHVI 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00224 348 MobiDBLite consensus disorder prediction 145 199 - -
Phco1g00224 348 PANTHER GATA TRANSCRIPTION FACTOR 33 311 - -
Phco1g00224 348 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 235 296 - -
Phco1g00224 348 CDD ZnF_GATA 237 284 IPR000679 GO:0006355|GO:0043565
Phco1g00224 348 PIRSF Txn_fac_GATA_plant 20 324 IPR016679 GO:0003677|GO:0005634|GO:0045893
Phco1g00224 348 ProSitePatterns GATA-type zinc finger domain. 238 263 IPR000679 GO:0006355|GO:0043565
Phco1g00224 348 MobiDBLite consensus disorder prediction 149 167 - -
Phco1g00224 348 ProSiteProfiles GATA-type zinc finger domain profile. 232 268 IPR000679 GO:0006355|GO:0043565
Phco1g00224 348 SMART GATA_3 232 282 IPR000679 GO:0006355|GO:0043565
Phco1g00224 348 Gene3D - 232 282 IPR013088 GO:0006355|GO:0008270
Phco1g00224 348 FunFam GATA transcription factor 226 314 - -
Phco1g00224 348 Pfam GATA zinc finger 238 271 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00224 Phco-Chr1 1576510 1577669 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Phco1g00224 GATA 4.6e-15 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00224 1 1576510 1577669 Phco1g00224 1 1576510 1577669 ECH