Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00199 ATGGGAGTTAACATGTCAAACACACCACCTCACACCAAAGACTTGTTTTCCTCTCCAACTCTCTCTCTTAGCCTAGCAGGGATTTTCCGGCATGCGGAGGAGGCGGCGGCGACGTCCGACATGGTGGTTGCCGGCGATGAGGTCCGGCGAGAGGACACTGTTGAGATTAGCAGTGACAACTCAGGACCCATGAGATCCAGGTCAGAAGAAGATTTTGATGGAGAAGGTGCTCATGAGGATGACGATGATGAGAACAACGATGATGGTGATAGGAGTAAGAAAAAGAAGAGGAAGTATCACAGACACACCGTTGAACAGATCAGAGAAATGGAAGCGCTTTTCAAGGAATCACCGCATCCTGATGAAAAGCAGAGGCAACAACTCAGCAAGCAACTTGGCCTTGCTCCAAGGCAAGTAAAGTTTTGGTTCCAAAATCGCCGAACCCAAATAAAGGCAATACAAGAGCGCCATGAAAACTCGTTGTTGAAGGCAGAATTAGACAAACTGAAGGAGGAAAACAAGGCCATGCGGGAGATCATCAACAAATCTTGTTGCCCCAATTGTGGCATGGTAACGGCTACCATAGAAGCTTCCATGTCCACTGAAGAAAAACAACTTCTTATTGAAAATGTCAAACTCAAAGCTGAGGTAGAGAAACTCCGAGCAACTTTGGGAAAATGTTCACCAACGTCTCCTGCATCTTCTGCTGGTCATGACGAGGAAGAGAATAGAAGCTCTTTGAACTTTTACAACGGAGTTTTTGGGCTCGAGAAATCAAGGATAATGGAAATAGTAAACCGGGCAACGGAAGAGCTCATAAAGATGGCAAACATGGGGGGACCATTGTGGGTTCGTAGCGTTGAAACAGGTCGTGAAATACTTAACTATGATGAATATGTGAAGGAGTTCGCAGTTGAAAATTCGTGCAGTGAAAAGCCGAAGACTTTCATCGAAGCCTCAAGAGACTCCGAGGTTGTTTTTATGGATCTCCCTCATCTGCTCCAAACCTTTCTAGATGTGAATAAATGGAAGGAAATGTTTCCGTGCTTGATATCAAAGGCTGCAACTGTTGATGTTATATGCAATGGAGAAGGTTCCAACGGGAATGGTGCAGTGCAGTTGATGTTTGCTGAGCTGCAAATGCTCACTCCAATGGTGCCCACCAGAGAAGTGTATTTTGTGAGGTGCTGCAAACAGTTGAGTGATGAACAGTGGGCAATAATTGATGTATCTGTAGACAAAGTAGAAGACAACATTGATGCATCCCTTGTGAAATGCAGAAAACGCCCATCTGGTTGTATTATTGAGGATAAGTCAAACAGCCATTGCAAGGTGATATGGGTGGAGCACTTGGAGTGCCAGAAGAGCACAATCCATACATTGTACCGAACCATTGTCATCAGTGGTCTAGCTTTTGGGGCAAGGCATTGGATAGCCACACTACAACTTCAGTGCGAACGTCTAGTTTTTAACATGGCCACAAATGTTCCTACGAAGGACTCAACTGGTGTTGCAACGTTGGCTGGGAGGAAAAGCATTTTAAAGTTGGCACAAAGAATGACACGGAGTTTCTGCCATGCAGTTGGCGCATCAAGTTTCCATACGTGGACCAAGTTCGCTAGTAAAACAGGAGAAGACATGAGGATTAGCTCTAGGAAGAACTTGAATGACCCTGGTGAACCTCTTGGGGTTATCTTGTCTGCGGTTTCTTCTGTATGGCTTCCTGTCTCTCCTAATGTGCTGTTTGATTTCTTGAGGGATGAAGCTCGTCGAAGTGAGTGGGATATGATGTCCAGTGGTGGGTCAGTGCAGTTGATTGCAAATTTAGCTAAAGGAAAAGACCGAGGCAATGCTGTAAATATCCAAAAAATACAATCAAAAGAGAACACTGTGTGGGTAGTGCAAGATAGCTGCACAAGTGCTTATGAGTCAATTGTGGCATATGCTGCTGTGGAATTTGCTGGTCTTCAGTCTGTGCTGACAGGATGTGATTCAAGTAATCTTGCTATTTTGCCGTCAGGATTCTCAATTCTTCCTGATGGGATTGAGGGAAGGCCATTGCTGATAAGGTCAAGGCAAGAAGAAAAAGGAACAGAAGGAGGGTCTTTATTTACAATGGTATTCCAGATGCTTGTCGATGCTTCTCCTACAGCCAAGTTAACAATGGAGTCTGTGGAATCGGCCAATAATCTTGTGTCTTGTACATTAAGAAATATTAGAACAAGTTTAGAGTGTGAAGATGGTTAG 2247 0.4455 MGVNMSNTPPHTKDLFSSPTLSLSLAGIFRHAEEAAATSDMVVAGDEVRREDTVEISSDNSGPMRSRSEEDFDGEGAHEDDDDENNDDGDRSKKKKRKYHRHTVEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKAELDKLKEENKAMREIINKSCCPNCGMVTATIEASMSTEEKQLLIENVKLKAEVEKLRATLGKCSPTSPASSAGHDEEENRSSLNFYNGVFGLEKSRIMEIVNRATEELIKMANMGGPLWVRSVETGREILNYDEYVKEFAVENSCSEKPKTFIEASRDSEVVFMDLPHLLQTFLDVNKWKEMFPCLISKAATVDVICNGEGSNGNGAVQLMFAELQMLTPMVPTREVYFVRCCKQLSDEQWAIIDVSVDKVEDNIDASLVKCRKRPSGCIIEDKSNSHCKVIWVEHLECQKSTIHTLYRTIVISGLAFGARHWIATLQLQCERLVFNMATNVPTKDSTGVATLAGRKSILKLAQRMTRSFCHAVGASSFHTWTKFASKTGEDMRISSRKNLNDPGEPLGVILSAVSSVWLPVSPNVLFDFLRDEARRSEWDMMSSGGSVQLIANLAKGKDRGNAVNIQKIQSKENTVWVVQDSCTSAYESIVAYAAVEFAGLQSVLTGCDSSNLAILPSGFSILPDGIEGRPLLIRSRQEEKGTEGGSLFTMVFQMLVDASPTAKLTMESVESANNLVSCTLRNIRTSLECEDG 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00199 748 CDD homeodomain 100 151 IPR001356 GO:0003677
Phco1g00199 748 SMART HOX_1 95 157 IPR001356 GO:0003677
Phco1g00199 748 Pfam Homeodomain 96 151 IPR001356 GO:0003677
Phco1g00199 748 ProSiteProfiles 'Homeobox' domain profile. 93 153 IPR001356 GO:0003677
Phco1g00199 748 Coils Coil 152 182 - -
Phco1g00199 748 SMART START_1 263 487 IPR002913 GO:0008289
Phco1g00199 748 FunFam Homeobox-leucine zipper protein GLABRA 2 263 486 - -
Phco1g00199 748 Coils Coil 203 223 - -
Phco1g00199 748 CDD START_ArGLABRA2_like 258 486 - -
Phco1g00199 748 Pfam START domain 264 487 IPR002913 GO:0008289
Phco1g00199 748 SUPERFAMILY Homeodomain-like 85 154 IPR009057 -
Phco1g00199 748 MobiDBLite consensus disorder prediction 37 104 - -
Phco1g00199 748 FunFam Homeobox-leucine zipper protein HDG1 80 169 - -
Phco1g00199 748 Gene3D - 323 480 IPR023393 -
Phco1g00199 748 ProSitePatterns 'Homeobox' domain signature. 128 151 IPR017970 GO:0000981|GO:0006355
Phco1g00199 748 Gene3D - 81 165 - -
Phco1g00199 748 ProSiteProfiles START domain profile. 254 490 IPR002913 GO:0008289
Phco1g00199 748 SUPERFAMILY Bet v1-like 256 487 - -
Phco1g00199 748 SUPERFAMILY Bet v1-like 516 736 - -
Phco1g00199 748 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 88 743 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00199 Phco-Chr1 1399958 1404866 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phco1g00199 START 4.2e-55 CL0209