Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00194 ATGGCATCTCGCCGCCGCATGTTATTGAAGGTCATAATCCTTGGAGATAGCGGGGTTGGTAAAACATCACTGATGAATCAGTATGTGAATCGTAAATTTAGCAATCAGTATAAGGCAACCATTGGTGCAGATTTTCTCACCAAGGAGGTTCAATTTGAAGATAGGTTGTTCACATTGCAGATTTGGGATACTGCTGGTCAAGAGCGGTTTCAGAGTCTTGGTGTGGCTTTCTACCGCGGTGCAGATTGCTGTGTCCTTGTTTATGATGTAAATGTCATGAAATCCTTTGACAATCTTAACCACTGGCGAGAAGAATTTCTGATTCAGGCTAGTCCATCTGATCCTGAAAACTTCCCATTTGTTGTCTTGGGAAACAAAATAGACGTTGATGGTGGAAATAGCAGAGTTGTTTCTGAGAAGAAAGCGAAGGCATGGTGTGCTTCAAAGGGAAACATACCCTACTTTGAGACATCTGCAAAAGAAGGATTTAATGTTGAAGCTGCTTTCCAGTGCATAGCAAAAAATGCACTGAAGAATGAACCTGAAGAAGAAATGTACCTGCCAGACACAATCGAAGTTGGTGGTGGTGGACGGCAACAGAGATCTACTGGATATCAGGAAATATATGTTGAAAATTGTTGTGTTCAATTGATTTATGACATTGATGTTCCTAGTTTAAGCATGGCTTTAAATCTGGGTTCCCTTCTTGGTGGCTCTCGATGGTTGGAGGAGGTGGTTGTGGCGGTTTCCGCCGTCTATGTTTTTGTACATTCCATAATGATCACGTATTCCCGAGTGTATTTGGAGATCTGGAGTGTACATTCCAGATTTTGTGATTTGAGTCCTGATAATGGTTTAGAGAAAAAGAAGGTAATGGAGTCCACCAAAGAACAATCGGGAATTCTCCACCAGATCTTACCTCCACGTCTAGAAGATGCCGGCCTCGAAGATCCCGCTCTTCCACCGGAATCCATCCACCAAGCTTTTCTCCAAGCAGCCGCCGCCGTCAAATCACGCGCCGCTTCCATTTTCTCCACCACCGCCGACACGGAGGACCACGATGACGGTTGCGTAAGCGACCCGTGGCCCACCTCCGAGGAAGCCTCTGATGTAGTCGTCGGAATCGACGCGGAAAATGAACCGCCGGGATCCTGCGCCGTCGAGAGGGGAGTCGAGGCTAGCGCCGACGAAGTCAGGGTTGTCGGAGCCGGCGGCGGCGGCGCGGATGAAGTTGTGGTGGCGGGAGAAGGGAAATTGGGAGAGGATGTGGAAGCGTGCGTGGATGAGTTACAAGGGTTGAATATCAAAGATGTGGAGAAAGATGGTGAAGTTAGAGAAGAGAATGATGAAGAAAACAAGAAACCTACCTTGGTTGAAGGGTATGCGTGA 1389 0.4708 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNHWREEFLIQASPSDPENFPFVVLGNKIDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFQCIAKNALKNEPEEEMYLPDTIEVGGGGRQQRSTGYQEIYVENCCVQLIYDIDVPSLSMALNLGSLLGGSRWLEEVVVAVSAVYVFVHSIMITYSRVYLEIWSVHSRFCDLSPDNGLEKKKVMESTKEQSGILHQILPPRLEDAGLEDPALPPESIHQAFLQAAAAVKSRAASIFSTTADTEDHDDGCVSDPWPTSEEASDVVVGIDAENEPPGSCAVERGVEASADEVRVVGAGGGGADEVVVAGEGKLGEDVEACVDELQGLNIKDVEKDGEVREENDEENKKPTLVEGYA 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00194 462 ProSiteProfiles small GTPase Ras family profile. 3 306 IPR001806 GO:0003924|GO:0005525
Phco1g00194 462 SMART rho_sub_3 11 179 IPR001806 GO:0003924|GO:0005525
Phco1g00194 462 MobiDBLite consensus disorder prediction 438 456 - -
Phco1g00194 462 SMART rab_sub_5 9 179 - -
Phco1g00194 462 SMART ran_sub_2 14 226 - -
Phco1g00194 462 ProSiteProfiles small GTPase Rab1 family profile. 4 216 - -
Phco1g00194 462 Gene3D - 1 189 IPR027417 -
Phco1g00194 462 CDD Rab7 9 182 - -
Phco1g00194 462 Pfam Ras family 10 177 IPR001806 GO:0003924|GO:0005525
Phco1g00194 462 SMART ras_sub_4 6 179 - -
Phco1g00194 462 MobiDBLite consensus disorder prediction 438 462 - -
Phco1g00194 462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 187 IPR027417 -
Phco1g00194 462 PANTHER RAB FAMILY 1 193 - -
Phco1g00194 462 FunFam Ras-related protein Rab7 1 189 - -
Phco1g00194 462 ProSiteProfiles small GTPase Rho family profile. 2 176 - -
Phco1g00194 462 PRINTS Transforming protein P21 ras signature 116 129 - -
Phco1g00194 462 PRINTS Transforming protein P21 ras signature 32 48 - -
Phco1g00194 462 PRINTS Transforming protein P21 ras signature 50 72 - -
Phco1g00194 462 PRINTS Transforming protein P21 ras signature 9 30 - -
Phco1g00194 462 PRINTS Transforming protein P21 ras signature 154 176 - -
Phco1g00194 462 NCBIfam small GTP-binding protein domain 10 172 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00194 Phco-Chr1 1374402 1380152 Transposed