Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00193 ATGTCGTCTCCGTCGCCGGCGGAGACTCCTTCCGACGCTAACTCCACTGCCTCTCCTCCTCCTCCGGATGAAACACCTCTCGTACCTAACGCAACCGTATCCCCTCCTCCGCCTCCTGACACCACCAACGCCACCGTTACTCCTCCTCCGCCTTTAGCCGCAGCTCCGAGTAATACTGTTGGCGGCGGGTTGTCGCCGGGTACATTGAGTGGGATAATTATAGGGGCCGTGTTAGGTGCAGTAGGTATGCTTATTGTTGGGGGCATTTTCTTTTGCGTCTATAGGAATTGGAAAAAGAAGAGAAGCCAGAACAACTACTCTCAACCGTCACAACCGAAAGCTGACATGGCTGGTGGTGGCAACCTTCAGCATTGGCAAGACCGTGTTTCTCCAATGACAGATGGTAAAGCAGGCTTGCCGCCCAAGCCTAGTCCTGGGGGTTTAGTGAATCATAAACTGTCATCCGCTGGTCTCCCCACACCAACTGTCAATTCTTCAGGCACTGGCAGTAGTTTGGGGTCCGAGAAGGTGCAGCCTTCACCTGGCATTTCCTTGGCGCTATCTCAAAGCACCTTTACACACGATGAGTTAGCTATGGCCACGGATGGATTCTCCAACTCAAATCTTCTTGGTCAAGGTGGTTTTGGCTATGTCCACAAAGGACTTCTCCCAAATGGGAAAATTGTTGCAGTCAAGCAGTTGAAATCTGAGAGTAGACAAGGGGAGCGTGAGTTCCATGCAGAGGTCGAGGTCATTAGCCGTGTGCATCACAGACACCTTGTTTCACTAGTTGGTTACTGCATATCAGACAACCAGAAGATGCTTGTCTACGAGTATGTGCCAAATGATACTCTAGAATTTCATTTGCATGGAAAGGACAGACCATCAATGGACTGGTCGACAAGGATGAAGATTGCTATAGGATCTGCAAAAGGATTGGCATACCTGCATGAGGACTGTAATCCCAAAATCATACACCGAGACATCAAAGCATCTAACATTCTTATTGATGATAGTTTTGAGGCTAAGGTTGCAGATTTTGGACTTGCAAAGTTTTCATCAGACACAGAAACCCATGTTTCTACTCGAGTGATGGGAACTTTTGGATACATGGCTCCAGAATATGCTGCTAGTGGGAAACTAACTGAAAAGTCAGATGTTTTCTCCTTTGGTGTTGTGCTTTTGGAGTTGATCACTGGACGGAAACCGGTTGATAAAACTCATCCCTTCTTAGATGACAGCATGGTTGAATGGGCTAGGCCTTTACTGTCTCAAGCTTTTGAGAATGGCAACTTTGATGGACTTGTTGATCCAAAGTTGCAGAAAAATTACAATCATGATGAGATGATTCGAATGACTGCTTGTGCTGCAAGTTGTGTGCGCCATTCAGCCAGGCTACGACCTAGAATGAGCCAGGTTGTTCGAGCTCTGGAAGGAAATATTTCTCTAGAAGATCTAAATGAGGGGAGCGCACCTGGACACAGTAGAGTTTTTGGTTCCTTTGAGAGTTCTAGCTATGATAGCGTCCAATACAGTGAAGACATGAAGAACTTCAGGAAGCTGGCACTGGAAAGCCAAGAGCAAGGTATTAGTGAGTACAGTGGTCCCAGCAGTGATTACGGTCGACATCCATCTGTCTCTACCAGTTCGGGACAGCAAAATACGCAGGAAATTGAATTGGGGGAACGTGCAGGGCAGCAACCGTGA 1707 0.4757 MSSPSPAETPSDANSTASPPPPDETPLVPNATVSPPPPPDTTNATVTPPPPLAAAPSNTVGGGLSPGTLSGIIIGAVLGAVGMLIVGGIFFCVYRNWKKKRSQNNYSQPSQPKADMAGGGNLQHWQDRVSPMTDGKAGLPPKPSPGGLVNHKLSSAGLPTPTVNSSGTGSSLGSEKVQPSPGISLALSQSTFTHDELAMATDGFSNSNLLGQGGFGYVHKGLLPNGKIVAVKQLKSESRQGEREFHAEVEVISRVHHRHLVSLVGYCISDNQKMLVYEYVPNDTLEFHLHGKDRPSMDWSTRMKIAIGSAKGLAYLHEDCNPKIIHRDIKASNILIDDSFEAKVADFGLAKFSSDTETHVSTRVMGTFGYMAPEYAASGKLTEKSDVFSFGVVLLELITGRKPVDKTHPFLDDSMVEWARPLLSQAFENGNFDGLVDPKLQKNYNHDEMIRMTACAASCVRHSARLRPRMSQVVRALEGNISLEDLNEGSAPGHSRVFGSFESSSYDSVQYSEDMKNFRKLALESQEQGISEYSGPSSDYGRHPSVSTSSGQQNTQEIELGERAGQQP 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00193 568 MobiDBLite consensus disorder prediction 527 568 - -
Phco1g00193 568 MobiDBLite consensus disorder prediction 101 180 - -
Phco1g00193 568 Pfam Protein tyrosine and serine/threonine kinase 207 476 IPR001245 GO:0004672|GO:0006468
Phco1g00193 568 MobiDBLite consensus disorder prediction 523 568 - -
Phco1g00193 568 SUPERFAMILY Protein kinase-like (PK-like) 180 477 IPR011009 -
Phco1g00193 568 Gene3D Phosphorylase Kinase; domain 1 171 279 - -
Phco1g00193 568 MobiDBLite consensus disorder prediction 1 59 - -
Phco1g00193 568 SMART serkin_6 204 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g00193 568 MobiDBLite consensus disorder prediction 155 180 - -
Phco1g00193 568 ProSiteProfiles Protein kinase domain profile. 204 483 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g00193 568 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 84 524 IPR047117 -
Phco1g00193 568 MobiDBLite consensus disorder prediction 15 55 - -
Phco1g00193 568 FunFam Proline-rich receptor-like protein kinase PERK8 176 279 - -
Phco1g00193 568 Gene3D Transferase(Phosphotransferase) domain 1 280 489 - -
Phco1g00193 568 ProSitePatterns Protein kinases ATP-binding region signature. 210 232 IPR017441 GO:0005524
Phco1g00193 568 FunFam Proline-rich receptor-like protein kinase PERK1 280 488 - -
Phco1g00193 568 ProSitePatterns Serine/Threonine protein kinases active-site signature. 324 336 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00193 Phco-Chr1 1368149 1372313 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Phco1g00193 PK_Tyr_Ser-Thr 5.1e-49 CL0016