Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00181 ATGAGCAAAACCATTATCCTAAATTCGCCTAAAACAAAGATGTCAAAGAAAATCTCAAAATCCCTCAGAAACTACCTCTCCAAAATCAAACCCCCCCAACGTAAGATGATTCAATTATCCTCTAAGAAATTTCTCAAAGGGTGCAAGCATCCAAGGACTCCTTCTCTCGACATGGACAACAACAAAAACATCAGCACCACCAACGCCAAGGACGACGAAGCCATGTTAGCAGACATTGATCGCTTTCTCATTGAGAATTTCAAGAACCTATTCCTCGAGAATCGTGAAGAAACCACCACCAACAAAGAACCCAAAGAAGATAAATCTCTCAAACTAGACTCTATCAGATTTGACTCTTCTACAAGGTTCGATGAGTCGCCACTGAACCTCTTCACAGACACAACAACCGAAGCAGGATCCAGTTTGACCATGTCCGAGATTGAGGGTGCGGAGGAACAAGCCACACAATCCACGGTTCCAAGTAACTGCGTGGTGGTCTTGGCAAACTCCGCCAGACCCAGCGAGGATTTCCGCCGCTCCATGGAGGGCATGCTTGAAGCGAGATTGAAGAAGAGTGAAAAGGTGGATTGGGACTTCATGCAGGAGCTTTTGTTCTGTCACATGAATCTGAACCAGAAGAAGTGGCACAAGTTCATTCTCAGCGCCTTCGTGGAGGTGGCCACCACCATGCGCCACCCGCCGGAGATTTCTCCGGCGAAGCCCCACCCACCGCAGAGTGTTCGGACTGTTAGGATCGGAAGGGAGGTGCGAAAGAAGACAAAGGAAGCAATCACCTTTGAATTTGGGTCGCCCTAA 816 0.4792 MSKTIILNSPKTKMSKKISKSLRNYLSKIKPPQRKMIQLSSKKFLKGCKHPRTPSLDMDNNKNISTTNAKDDEAMLADIDRFLIENFKNLFLENREETTTNKEPKEDKSLKLDSIRFDSSTRFDESPLNLFTDTTTEAGSSLTMSEIEGAEEQATQSTVPSNCVVVLANSARPSEDFRRSMEGMLEARLKKSEKVDWDFMQELLFCHMNLNQKKWHKFILSAFVEVATTMRHPPEISPAKPHPPQSVRTVRIGREVRKKTKEAITFEFGSP 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00181 271 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 60 227 IPR038933 GO:0045892
Phco1g00181 271 NCBIfam uncharacterized plant-specific domain TIGR01568 164 229 IPR006458 -
Phco1g00181 271 ProSiteProfiles OVATE domain profile. 166 229 IPR006458 -
Phco1g00181 271 Pfam Transcriptional repressor, ovate 170 229 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00181 Phco-Chr1 1294666 1295637 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Phco1g00181 Ovate 2.3e-18 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00181 1 1294666 1295637 Phco1g00181 1 1294666 1295637 ECH
Phco10g01925 10 41241170 41242000 Phco1g00181 1 1294666 1295637 PCT