Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00167 ATGGCCAAAGAAGATCTTGGACTTGAAATCACGGAGCTGAGATTGGGTCTACCCGATGCCGAGCATGTCAGTGTGGCTAACAAGAACAATAAGAGGGTGTTCTCGGAGATTGGTGACGTTGGAGATGAAAACAGCTCCTCCGGTGGCGGCCACCGGAAAATGGAGAACAAGAATCAAGTGGTGGGGTGGCCTCCTGTGTGCTCCTACAGGAAGAAGAACAGTGTGAACGAAGCTTCAAAAATGTACGTTAAGGTTAGCATGGATGGTGCTCCTTTCTTGCGTAAAATGGATCTGGGTATGCACAAGCGATACTCCGATTTAGCCTTCGCTTTGGAGAAGCTCTTTGGTTGCTATGGAATGGTGGAAGCATTGCAGAATGCGGAGAACAGTGAACACGTTCCCATTTATGAGGACAAAGATGGTGACTGGATGCTGGTTGGAGATGTCCCATGGGAAATGTTTGTGGAGTCATGCAAGAGGCTGAGGATTATGAAGAGAGCAGATGCAAAGGGGTTTGGTTTGCAACCAAAAGGATCTTTAAAGGGATTCATAGAAAGCGTGGGAAAGTGA 570 0.4754 MAKEDLGLEITELRLGLPDAEHVSVANKNNKRVFSEIGDVGDENSSSGGGHRKMENKNQVVGWPPVCSYRKKNSVNEASKMYVKVSMDGAPFLRKMDLGMHKRYSDLAFALEKLFGCYGMVEALQNAENSEHVPIYEDKDGDWMLVGDVPWEMFVESCKRLRIMKRADAKGFGLQPKGSLKGFIESVGK 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00167 189 Pfam AUX/IAA family 50 172 IPR033389 -
Phco1g00167 189 Gene3D - 74 176 - -
Phco1g00167 189 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 169 IPR003311 GO:0005634|GO:0006355
Phco1g00167 189 ProSiteProfiles PB1 domain profile. 80 168 IPR000270 GO:0005515
Phco1g00167 189 SUPERFAMILY CAD & PB1 domains 73 165 - -
Phco1g00167 189 FunFam Auxin-responsive protein 75 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00167 Phco-Chr1 1192807 1195678 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Phco1g00167 AUX_IAA 1.1e-43 CL0072