Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00117 ATGATGCCCTCACTCAGCGCAACAATGGACGATCTTCGCGCTCTTAGGTTCGTCTTCGTTCAAGGGTTCCTTCAAGTCAAGCCTCGACTGCTGGAGAAATGCCTACGAAGGTGCGAGGATGCGAACATTGTTGGTTGTGAAAGAGAGTGTTGGGTTTGTTTTGCCAAGCAGAGAGAAGGGAGAAGGTGGGTTGGGCTCATTGGTGAAAAGGTTATGGCTTTTTGGTTTTGTTGCGGAAAAGTTTCGAACCGGGCAAGGCGAGGGAAAGAACAACCCACATGGCGGGTGTTTTCTTTGAAGGAATTACACTCTGCTACGAATAATTTCAACTATGACAACAAGCTTGGAGAAGGATGCTTTGGCAGTGTGTACTGGGGCCAACTTTGGGATGGATCGCAAATCGTGGTGAAAAGATTGAAAGTTTGGAGCAACATAGATGAGACAGAATTTACAGTTGAACTTGAAATCTTGGCAAGAATACGACACAAGAATCTTCTCAGTTTTCGTGGCTTCTGTGCTGAAGGACAGGAACGGTTAATTGTGTATGAATATATGCATAATCTGAGTCTCCACTCTCATCTTCATGGACACCATTCATTCGAAAGCCCTCTCGATTGGAATCGTCGGATGAATATAGCAATTGGTTCTGCTGAAGGAATTGTGTACCTTCACCACCAAGCAACGCCACGTATCATCCACAGGGATATTAAATCAAGCAATGTGTTGCTGGATTCTGATTTCCGGGCCAGGGTTGCTGATTTTGGGTTTGCCAAGTTGATCCCTGATGGGGCAACACATGTGATGACTACAAAACTTAAGGGAACTCTCGGCTACCTTGCACCAGAATATGCTATGTTAGGTAAAGCAAATGAGAGTTGTGATGTCTACAGTTTTGGTGTTCTCCTTCTAGAACTCGCTAGTGGCAGAAGACCAACCGAAAAGCTTAGTTCCACAGTGAGGCAATCAATAGTTGATTGGGCATTGCCATTGGCTTGTGAGAAGAAATTTCGTGAAATTGCTGATCCAAGACTAAATGGTAAATATGTGGAGGCAGAGCTTAAAAGGGTAGTTTTAGTTGCACTTATGTCTGCTCAGGATCTTCCTGAGAAGAGACCAACCATGCTTGATGTGATAGAGCTACTCAAGGGAGAGTCTAAGGACAAATTTTCTCATATAGAGAACAGTGAAATGTTCAGAAACCCTCTAGATGCAGAAACCAATGATGGAACATCAGAGGCTGAAGACAGTTTCGACTATATCTCAGAAGAAAAAGAGTTAGAACGTCCGTTGAGAGAGAATGCTGAACTATGA 1311 0.4394 MMPSLSATMDDLRALRFVFVQGFLQVKPRLLEKCLRRCEDANIVGCERECWVCFAKQREGRRWVGLIGEKVMAFWFCCGKVSNRARRGKEQPTWRVFSLKELHSATNNFNYDNKLGEGCFGSVYWGQLWDGSQIVVKRLKVWSNIDETEFTVELEILARIRHKNLLSFRGFCAEGQERLIVYEYMHNLSLHSHLHGHHSFESPLDWNRRMNIAIGSAEGIVYLHHQATPRIIHRDIKSSNVLLDSDFRARVADFGFAKLIPDGATHVMTTKLKGTLGYLAPEYAMLGKANESCDVYSFGVLLLELASGRRPTEKLSSTVRQSIVDWALPLACEKKFREIADPRLNGKYVEAELKRVVLVALMSAQDLPEKRPTMLDVIELLKGESKDKFSHIENSEMFRNPLDAETNDGTSEAEDSFDYISEEKELERPLRENAEL 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00117 436 Pfam Protein tyrosine and serine/threonine kinase 111 318 IPR001245 GO:0004672|GO:0006468
Phco1g00117 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Phco1g00117 436 ProSitePatterns Protein kinases ATP-binding region signature. 115 137 IPR017441 GO:0005524
Phco1g00117 436 SMART serkin_6 109 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g00117 436 FunFam PTI1-like tyrosine-protein kinase At3g15890 81 184 - -
Phco1g00117 436 CDD STKc_IRAK 115 383 - -
Phco1g00117 436 Gene3D Transferase(Phosphotransferase) domain 1 185 399 - -
Phco1g00117 436 FunFam PTI1-like tyrosine-protein kinase At3g15890 185 397 - -
Phco1g00117 436 Gene3D Phosphorylase Kinase; domain 1 79 184 - -
Phco1g00117 436 ProSiteProfiles Protein kinase domain profile. 109 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g00117 436 MobiDBLite consensus disorder prediction 421 436 - -
Phco1g00117 436 MobiDBLite consensus disorder prediction 398 436 - -
Phco1g00117 436 SUPERFAMILY Protein kinase-like (PK-like) 91 381 IPR011009 -
Phco1g00117 436 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 71 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00117 Phco-Chr1 871034 877849 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Phco1g00117 PK_Tyr_Ser-Thr 1.5e-41 CL0016