Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00099 ATGAGATACCATTGTGCTATTCTTGGTTTTGGAGTTATCTATTTATCAATTCTAAGCTCTAAGTTTTCAGCATTATATGGTCCTGTGACTTGCTGTCTCTTTGGCATTTCCACTCTGGACAAGAAGGTTTCATCTCTCGTTTCTACTGATTTGTATTTTGTCTATGTTTTTCTTTCGTATTCTAGTTCAGAAAAACTGCTGACCTATCTTTATATCACATTGATGCCAAGTGCTTCAGGTGATTTGAATTTGATGGATTCCAATAATTGGAGACCTAATCAGGGTAATAACCCCACTATGGATACAAACGATTGGAGAGCTCAACTACCACCTGATTCACGCCAAAGAATTGTCAACAAAATAATGGACATATTAAAAAAACATCTTCCTGTTTCTGGTCCTGACGGATTGCATGAACTTCGGAAGATTGCTAAAAGGTTTGAAGATAAGATTTTTACTGCTGCAACAAGCCAGCCTGATTATCTACGGAAAATATCTATGAAGATGCTTACAATGGAGACTAAATCCCAAAACACCATGGCTAACAATATGCCACCAAATCAAGTTGGCCCAAGCAATAAACCTACAGATCAAGGACTTGTTTTGCAGCCTCAAGTTCATAATCTTGGGCAACAACATTCTATTCCCTTGCCTAGTCAGATGCAGCCACATCAACAGCTTCTATCTCAAAATGTTCAAAATAATGTTGCATCTCAACCTAACCTTCCATCTGTATCTAGTCTAGCCCAGACTACCAGCCAAAATATTGTCCAGAACTCTAACATACAGAATATACCTGGGCCGAATTCAGTTGGAAGCACCATTAGCCAAAATTCCAACTTACAGAGTATGTTTCCTGGTTCTCAGAGATCAATGCCAGGAAGGCAGCAGGTTGTTCCCCCACAACAACAGCTGCAATCACAGAATCCCCAGCAATTTCTTTACCACCAGCAGTTTTTGAAGCAGAAGCTCCAGCTACAATCTCAGATGCAGCAACAACAACAACAAAGCCTTATGCAACCAAATCAGTTGCAATCTTCTCAGCAATCTACTAATGTTCAACAGTCAATGCAGTCCATGCCTCAGCAACATTCACAAGTTATGAGGCATCAACAACAACAGACTTCTATGGTACATCAGCAACAAACACCAGTCACTCAACAGACAATCTTACCTGCACAACAGCAACAACTTATGGGACCTCAGTCAAATACCGCAAACATGCAGCATGCACAGATGCTCGGGCAACAGAACAATGTTGGTGATATACAGCAAACTCAGAGGATGCTTTCACAACAAAGTAATCTTACAAGCATGCAACAGAGACAACAACAGTTAATAAATCAGCAAAACAACCCAGCAAATGTACATCAACAACAATTGGGAAATAATGGCCCTGGGTTACAGCAGCAACATTTGCTTGGACCCGACTCTGGCAATGCAGACATGCACACAAGTCATCCCTCTGCACACATGCTGCAACATCCAAAGGTTCCAATGCAGCAACAATCACAACAAAATACATCAAATCTGTTGCTACCTCATTCACAGCAGTCACAGCCACTGGGTTCACAACAGCAATTAATGCCTCAGATTCACACTCAGTCTACACAGTTGCAACAACAATTGGGTTTGCAGCAGCAGCAGCAGCCAAATCCCTCACTACGAGATATGCAGCAAAGAATTCAAGCATCAGGGTCCTTACTTCAACAACAGAATGTTCTTGATCAACAAAAACAGTTGTATCAATCTCAAAGAAATCTTCCAGAAACATCAGCAACTTCTCTGGATTCTACAACACAGTCTGCACAACCAAGTGGGAATGATTGGCAAGAAGAAGTTTACCAGAAGCTCCAAGCCATGAAAGAGAGTTATTTGCCGGATATGAATGAAATGTACCAAAAAATTGCTAATAAACTTCAGCAGCATGATTCTCTTCTCCAACAGTCGAAATCAGATCAGATTGATAAGCTGAGGGCATATAAAATGATGTTGGAGAGAATGATGGCACTCGTACAGATTCCCAAGATCAACATTTTGCCCCATTTCAAGGAAAAACTGGGATCATATGAGAAGCAGATTATAAATCTCATAACAAATAGACCCAGGAAAGGCATGTCTTCTGTGCAGGTAGGACAGATTCCCCAGACTCATATGTCCTCCATGCAACAGCCCCAATCCCAAGTTACGCAATTACAGTCTCATGAAAATCAAATGAACTCTCAGCTGCAGTCAACAAATTTACAAGGTTCTGTGTCAACCATGCAGCAGAATAATATTGCAAGCTCTCAGCACAATCCTTTGTCTGGTGTATCAGCAGGACAACAAAATATGATGAATTCTATGCAACCTGTAACTAATTTAGATTCTGGACAAGGAAATTCTATGAACTCCCTTCAACATGTTCCAATGAACTCCATCCAGCAAACTACTGTTAGTACTCCTCAACAACAGACTAACATTAATTCCTTACAATCACAAGGTGGGGCAAATGTTAGTCAACCAAATTCCCTTCAGTCAGGTTCCAGTGCACTTCAACACCAACTGAAACATCAGCAGGAACAGCAGATGCTGCAGAATCAGCAATTCAAACAATATCAGCAGCGGCAAATGATGCAGAGGCAGCTCCTTCAGCAGCAGCAACTACACCATCCAGCAAAGCCACAGCTATCTGCACAATTGCAAACACATCAAATGTCCCAGCTTCACCAAATGAATGATATAAATGACATAAAAATGCGACAAGGAATGGGTGTTAAGCCAGGGGTCTTTCAACAACATCTTACATCAGGTCAACACTCAGCATATTCCCATCAACAGCTGAAACAAGGGAATGCATTTCCTGTTTCTTCACCCCAACACGTTCCAGCTGCATCTCCTCAAATTCAGCAACATTCATCTCCTCAAGTTGAACAACAAAATCATCTCCCGTCTAAAACTAAAGTTACAACTCCTCTGCAATCTTCTAATTCTCCCTTTGTGGGACCTACCCCTTCACCTCCTCTGGCTCCATCTCCTATGCCAGGAGAATCTGAGAAGCCCGTTCCCTGTGTTTCTTCAATATCAAATGGTGCAAATATTGGACATCAACAAACAGGGGGTGCAGTAGCACCAGCTCAATCCCTTGCCATTGGGACTCCTGGGATTTCAGCATCTCCTTTATTGGCAGAATTCAGTGGTCCAGATGGTGCGCATGGTAATGCTTTAGCTGCCACTTCTGGGAAGTCAACTGTTACAGAGCAGCCTCTTGAACGCCTAATTAATGTGGTAAAATCAATGTCATCTAAAGCATTAAGTTCGGCAGTCAGTGATATTGGTTCAGTTGTCAGCATGAATGATAGAATAGCAGGATCAGCTCCGGGTAATGGATCCAGAGCAGCAGTTGGTGAGGATTTGGTTTCCATGACTAATTGTCGCCTTCAGGCTAGAAATTTCATTACCCAAGATGGTACCAATGGAATTAAGAGGATGAAACGTTACACGAGTGCTATACCCTTGAATGGTGTATTATCTGCTGGTAGCATGAATGATAGCATCAAGCAGTTAACTGCTTCAGAGGCTTCTGATCTGGAGTCAACTGCAACATCCGGTGTCAAGAAACGGAAGATCGAGGTTAACCATGCCCTTTTGGAAGAAATAAGGGAGATTAATCACAGACTTATCGACACAGTAGTAGACATTAGCAATGTTGATCCAACACCTGCTGTTGCTGCAGCTGAAGGAGCAGAAGGAATCCTTGTCAAATGCTCTTTCATTGCTGTGGCTCTCAGCCCTAGCTTAAAATCCCAATATGCTTCAGCGCAGATGTCACCTATTCAGCCCCTGCGTTTACTGGTTCCTGCAAATTATCCTAATTGTTCTCCTATACTCCTAGACAAATTTCCAGTTGAATCCAGTAAGGAGAACGAAGATCTTTCAGCGAAGGCAAAGGCAAAGTTTAGCATATCTTTGCGCAGTTTATCACAACCTATGTCACTTGGGGATATAGCAAGGACTTGGGATGTTTGTGCTCGCAGTGTTATTTCTGAGCATGCCCAACAGAGTGGGGGAGGAAGCTTCAGCTCTAAGTATGGAACTTGGGAGAATTGCTTGACCACAAACTAA 4104 0.4215 MRYHCAILGFGVIYLSILSSKFSALYGPVTCCLFGISTLDKKVSSLVSTDLYFVYVFLSYSSSEKLLTYLYITLMPSASGDLNLMDSNNWRPNQGNNPTMDTNDWRAQLPPDSRQRIVNKIMDILKKHLPVSGPDGLHELRKIAKRFEDKIFTAATSQPDYLRKISMKMLTMETKSQNTMANNMPPNQVGPSNKPTDQGLVLQPQVHNLGQQHSIPLPSQMQPHQQLLSQNVQNNVASQPNLPSVSSLAQTTSQNIVQNSNIQNIPGPNSVGSTISQNSNLQSMFPGSQRSMPGRQQVVPPQQQLQSQNPQQFLYHQQFLKQKLQLQSQMQQQQQQSLMQPNQLQSSQQSTNVQQSMQSMPQQHSQVMRHQQQQTSMVHQQQTPVTQQTILPAQQQQLMGPQSNTANMQHAQMLGQQNNVGDIQQTQRMLSQQSNLTSMQQRQQQLINQQNNPANVHQQQLGNNGPGLQQQHLLGPDSGNADMHTSHPSAHMLQHPKVPMQQQSQQNTSNLLLPHSQQSQPLGSQQQLMPQIHTQSTQLQQQLGLQQQQQPNPSLRDMQQRIQASGSLLQQQNVLDQQKQLYQSQRNLPETSATSLDSTTQSAQPSGNDWQEEVYQKLQAMKESYLPDMNEMYQKIANKLQQHDSLLQQSKSDQIDKLRAYKMMLERMMALVQIPKINILPHFKEKLGSYEKQIINLITNRPRKGMSSVQVGQIPQTHMSSMQQPQSQVTQLQSHENQMNSQLQSTNLQGSVSTMQQNNIASSQHNPLSGVSAGQQNMMNSMQPVTNLDSGQGNSMNSLQHVPMNSIQQTTVSTPQQQTNINSLQSQGGANVSQPNSLQSGSSALQHQLKHQQEQQMLQNQQFKQYQQRQMMQRQLLQQQQLHHPAKPQLSAQLQTHQMSQLHQMNDINDIKMRQGMGVKPGVFQQHLTSGQHSAYSHQQLKQGNAFPVSSPQHVPAASPQIQQHSSPQVEQQNHLPSKTKVTTPLQSSNSPFVGPTPSPPLAPSPMPGESEKPVPCVSSISNGANIGHQQTGGAVAPAQSLAIGTPGISASPLLAEFSGPDGAHGNALAATSGKSTVTEQPLERLINVVKSMSSKALSSAVSDIGSVVSMNDRIAGSAPGNGSRAAVGEDLVSMTNCRLQARNFITQDGTNGIKRMKRYTSAIPLNGVLSAGSMNDSIKQLTASEASDLESTATSGVKKRKIEVNHALLEEIREINHRLIDTVVDISNVDPTPAVAAAEGAEGILVKCSFIAVALSPSLKSQYASAQMSPIQPLRLLVPANYPNCSPILLDKFPVESSKENEDLSAKAKAKFSISLRSLSQPMSLGDIARTWDVCARSVISEHAQQSGGGSFSSKYGTWENCLTTN 1367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00099 1367 MobiDBLite consensus disorder prediction 587 610 - -
Phco1g00099 1367 Pfam KIX domain 103 182 IPR036546 -
Phco1g00099 1367 MobiDBLite consensus disorder prediction 178 199 - -
Phco1g00099 1367 MobiDBLite consensus disorder prediction 946 1014 - -
Phco1g00099 1367 MobiDBLite consensus disorder prediction 278 307 - -
Phco1g00099 1367 MobiDBLite consensus disorder prediction 424 487 - -
Phco1g00099 1367 Gene3D Coactivator CBP, KIX domain 104 183 IPR036529 GO:0003712|GO:0006355
Phco1g00099 1367 MobiDBLite consensus disorder prediction 994 1011 - -
Phco1g00099 1367 MobiDBLite consensus disorder prediction 722 775 - -
Phco1g00099 1367 FunFam Mediator of RNA polymerase II transcription subunit 15a 104 182 - -
Phco1g00099 1367 MobiDBLite consensus disorder prediction 496 557 - -
Phco1g00099 1367 SUPERFAMILY Kix domain of CBP (creb binding protein) 102 178 IPR036529 GO:0003712|GO:0006355
Phco1g00099 1367 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A-RELATED 932 1356 IPR044661 GO:0003713|GO:0031490
Phco1g00099 1367 MobiDBLite consensus disorder prediction 946 993 - -
Phco1g00099 1367 Coils Coil 316 336 - -
Phco1g00099 1367 MobiDBLite consensus disorder prediction 333 359 - -
Phco1g00099 1367 MobiDBLite consensus disorder prediction 809 861 - -
Phco1g00099 1367 MobiDBLite consensus disorder prediction 424 557 - -
Phco1g00099 1367 MobiDBLite consensus disorder prediction 876 900 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00099 Phco-Chr1 722265 734036 Dispersed