Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00095 ATGGAGGAGTCAGGGGAAAATTGGCCTTCTGATTCTTATTTGGAAGTAGGTGATGACGTCAAGGATTTGTGTTTTGATGATGAAGAATTTGTGAGTGAGGAGGATGAGGGAGATTCCTTTTCTGAGAAGAAAACCATCAACAGAAAACAGAGACAACAGAAACTCAGGGAGAGGTTCCTTGCACTCTCAGCAACCATACCAGGCTTCCAAAAGATGGACAAGACTTCGATCCTGGACGAAGCTAGCAACTATGTGAGAGAACTTGAGCAACGAGTGAGAGAGCTGGAGCAAGAAGTTGAATCCAACAAGGTTTGTGTCAGCAGCAGCAGCTCTTGCGAATTGAACTCCAACAATGGCTATTACCATGGATCAAATCAAATTCTTCTGGAAGTCAAAGTGAGAGTGTTACAGAAGGAAGTTCTCATAATAGTTCACTGTGAGAAACAAAAAGGAATCATGCTCAAAATACTATCACACCTAGAAAATATCAATCTCTCTGTAATCAACAGCAGCGTCTTGCGATTTGGAAACTCCAAACTCGACATCACAATTACTGCTCAGATGGGTGAGGGATACAAGATGGGAGTGGATGAACTAGTGAAGACCCTCAGATTAGCGATCTTGACTCAGTAG 633 0.4265 MEESGENWPSDSYLEVGDDVKDLCFDDEEFVSEEDEGDSFSEKKTINRKQRQQKLRERFLALSATIPGFQKMDKTSILDEASNYVRELEQRVRELEQEVESNKVCVSSSSSCELNSNNGYYHGSNQILLEVKVRVLQKEVLIIVHCEKQKGIMLKILSHLENINLSVINSSVLRFGNSKLDITITAQMGEGYKMGVDELVKTLRLAILTQ 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00095 210 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 39 88 IPR011598 GO:0046983
Phco1g00095 210 Coils Coil 78 105 - -
Phco1g00095 210 Gene3D - 34 104 IPR036638 GO:0046983
Phco1g00095 210 Pfam Helix-loop-helix DNA-binding domain 43 89 IPR011598 GO:0046983
Phco1g00095 210 PANTHER BHLH TRANSCRIPTION FACTOR 48 208 - -
Phco1g00095 210 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 104 IPR036638 GO:0046983
Phco1g00095 210 SMART finulus 45 94 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00095 Phco-Chr1 689154 692667 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco1g00095 HLH 0.00016 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00095 1 689154 692667 Phco10g02035 10 42018996 42021838 PCT