Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00094 ATGATGGAGGACTCATGGCAAAACTGGCTCTCTCATTTGGGAATGAATGACAACTTTGGCTGCACCAACAATGTATGCTTTGAAGAGATGGTGTGGTTGAATAATGGGCAGGGTTGTGATAGCTCCAATAATGAGGTAGCATGCATGGGGATGAAGGAGGAACATTCAGAGTGTTGTTGCAGTAAAAGGGGTGTAGGGAAGCATGAGGAGTTGGAGGAAAAGGGAAGGGAGAAGAGAGGAACAAAAAGAGCAAGAACCTCTTCTGAGATAGAATATCACATAATCTCTGAGAGAAAAAGGAGACAGGATATTGCAGAGAAATTCATAGCACTCTCAGCTACTATACCTGGCCTGAAGAAGATAGACAAGGCCTCAATACTTGGGGAAGCCATAAAGTACATGCGACAACTTCAACAACGCATAGCAGTGTTGGAAAAAGCAAGCAACAATAACAGTGCAAAGTCGTTGATGATTTGTTCAACATCATGTGAAGAAAACTCTAACATTGAAGTTGAAGCAAGGGGATTGGAGAATGAAGTGCTGATTAGAATCTATTGTGAGAAACGAAAGGACATCATGCTAAACCTAATTACCCTTCTAAAAGATCTTCGTCTCTCAGTAACCAGTAGCACTGTATTGCCATTTGGAAACTCTCTTCTCAACATTATCGTCGTTGCACAGATGAGTGAGGAGTACAACTTGACGGTAACTGATTTGGTCAAGACATTGAAGCAGAATCTTTTGAAGTTTTATGATGTGTAA 762 0.4121 MMEDSWQNWLSHLGMNDNFGCTNNVCFEEMVWLNNGQGCDSSNNEVACMGMKEEHSECCCSKRGVGKHEELEEKGREKRGTKRARTSSEIEYHIISERKRRQDIAEKFIALSATIPGLKKIDKASILGEAIKYMRQLQQRIAVLEKASNNNSAKSLMICSTSCEENSNIEVEARGLENEVLIRIYCEKRKDIMLNLITLLKDLRLSVTSSTVLPFGNSLLNIIVVAQMSEEYNLTVTDLVKTLKQNLLKFYDV 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00094 253 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 88 137 IPR011598 GO:0046983
Phco1g00094 253 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 91 149 IPR036638 GO:0046983
Phco1g00094 253 Gene3D - 84 150 IPR036638 GO:0046983
Phco1g00094 253 SMART finulus 94 143 IPR011598 GO:0046983
Phco1g00094 253 Pfam Helix-loop-helix DNA-binding domain 93 138 IPR011598 GO:0046983
Phco1g00094 253 Coils Coil 134 154 - -
Phco1g00094 253 PANTHER BHLH TRANSCRIPTION FACTOR 47 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00094 Phco-Chr1 680160 681943 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco1g00094 HLH 4.2e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g02035 10 42018996 42021838 Phco1g00094 1 680160 681943 PCT
Phco1g00094 1 680160 681943 Phco10g02036 10 42026082 42029313 PCT