Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00093 ATGGATTGCCACACAGATTTCTTCAGCAACGATGACTTCGACGATTTCTTCTCCGACATCATCCTTCACCCGACACCGCCCACGCCCTTCTCCTCCGAAAGCGAAAGCGATCACTCCTTTCGCGCTTCCTCCACCCCCCAAACCACTTCCTTCCTCCCCATCGCCGCCGTTAACGCCGCCGCTTCCAAACGCTCCTCTCCCAGGACTTACATTCTCTCCTTCGATAACTCCACGGTGGTACCCGCCACACCCGAACCCTCCGCCCCTTCTTCCCCTTTACCTTCTAAACGCGCCCTCCACACCCAAAACCCCATAACCAGACCCAATCAAGGATCCAAGAGAACCCGAACCTCTTCTCAGACCATCGATCACATAATGGCCGAGAGAAGGAGGAGGCAGGAACTCACCGAGAGGTTCATAGCACTCTCAGCCACCATTCCCGGCTTGAAAAAGACGGACAAGGCTTCTGTACTTCGAGCAGCGATCGATTATGTGAAACAACTCAAAGAAAAGGTGCAGGAGCTAGAGAAACAAAACAGAAAGAGTGCAGAAGAGACAGTAATATTGGTGAATAAAACCGACCCAAATGGAAATGAAGGCATCACCAACTCCTCCACTGAAACCAACTGTAGCATCCTTCCGGAGATGGGAGCAAGAGTGTTGGGGAAGGAGGTGCTCATTGAGATCCACTGTGAGAAAGAATATGGTGTCGAGCTAAAAATATTGGACCATCTTGAAAATCTTCATCTCTGTGTCACCGGAAGCAGTGTCTTGCCATTTGGGAATTCAGCTCTCTGCATTACCATCACAGCTCAGATGGATGAGGAGTGCCAAATGACAGTGAATGATCTAGTGAAAAACCTTAGACAAGTGCTCTCAGTGTCTCATTTGGTGAGCGACAGTGATCCGTACTAG 915 0.5016 MDCHTDFFSNDDFDDFFSDIILHPTPPTPFSSESESDHSFRASSTPQTTSFLPIAAVNAAASKRSSPRTYILSFDNSTVVPATPEPSAPSSPLPSKRALHTQNPITRPNQGSKRTRTSSQTIDHIMAERRRRQELTERFIALSATIPGLKKTDKASVLRAAIDYVKQLKEKVQELEKQNRKSAEETVILVNKTDPNGNEGITNSSTETNCSILPEMGARVLGKEVLIEIHCEKEYGVELKILDHLENLHLCVTGSSVLPFGNSALCITITAQMDEECQMTVNDLVKNLRQVLSVSHLVSDSDPY 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00093 304 MobiDBLite consensus disorder prediction 24 47 - -
Phco1g00093 304 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 120 185 IPR036638 GO:0046983
Phco1g00093 304 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 119 168 IPR011598 GO:0046983
Phco1g00093 304 Coils Coil 158 185 - -
Phco1g00093 304 Gene3D - 117 188 IPR036638 GO:0046983
Phco1g00093 304 Pfam Helix-loop-helix DNA-binding domain 124 169 IPR011598 GO:0046983
Phco1g00093 304 MobiDBLite consensus disorder prediction 78 119 - -
Phco1g00093 304 MobiDBLite consensus disorder prediction 94 119 - -
Phco1g00093 304 MobiDBLite consensus disorder prediction 25 47 - -
Phco1g00093 304 PANTHER BHLH TRANSCRIPTION FACTOR 32 292 - -
Phco1g00093 304 SMART finulus 125 174 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00093 Phco-Chr1 672317 673884 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco1g00093 HLH 9.2e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g02036 10 42026082 42029313 Phco1g00093 1 672317 673884 PCT