Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00092 ATGGGGGAGCCATGCCACAAATATTGGTTCTCTGATATGGAAATACAAGATTTTGATTTCTTTAACCAAAGCCATGACAAGATTGAGTCACTGGATGATGAGGGTCAGATCTTTCAGGAGATCATGCATCAGCCAGCTTTCTCTTCTGACAGCGAAACTCACTCTCCCAAACTTCAATGCAAATCAATTTACGGAGGTAGTGGTTACACAGCTCTCACCAACAACAGGAGCAGCAACCTTGTGATGAACAGCAACAGCTCCAGCTTCCTCTTCTCATCACAACATGCACAAGAGAAACCTGCCACAGCCACCACTTCTCCAACTGCGTACATTCTATCTTTCAATGACTCCACCGTAGTTGCGGCTACCTGCCAAACCTACGGTGGAAAACAGCCGTACCAAGAGGAAGTTGTTGTAGGGAGTGGTGGCGCATGTCTTCCCTCAAAAGAGGTCTCAGAAAAACATTACATTGAACCTAAGCCCAACCCAACAACAAGAAAAGGAAGAAGTTCTGCAGAGACACTAGACCATATAATGACTGAGAGAAAAAGGAGACGGGAACTGACAGAGAGATTCATTGCACTTTCAGCCACCATACCTGGTTTGAAGAAGATTGACAAGGCCACTATACTTTGCGAAGCAATAACTTATGTGAAACGACTAAAAGAACGAGTAAGAGAGCTAGAAGAACAATGTAAGAGGACAAGGGTAGAGTCAGTGTCATTTGTTCATCAGAGATCCAATATTGCTAGTGACAAAGGCACAACCTCTCGTGCAATGAAATCTGATGAATGCTATAAAACCAGTGAAGCACTCCCTACAGTGGAAGCAAGAGTGTTTAAAAAAGATCTTCTCATCCGGATTCACTGCAAGATACAAAATGGCATTTTGATCAAAATTTTGGACCATCTTAACACTCTTGATCTCTACACAACCAGCAACAGTGTAATGCCATTTGGAAGTTCAACTCTTGACATCAGCATTGTTGCTCAGATTGGTGACAAATTCAATGCAACAATGAATGATCTAGTGAAAAACCTGAGACTGGTTCTCTTGCAGTCATCTGAAGCTCAACAATGA 1080 0.4269 MGEPCHKYWFSDMEIQDFDFFNQSHDKIESLDDEGQIFQEIMHQPAFSSDSETHSPKLQCKSIYGGSGYTALTNNRSSNLVMNSNSSSFLFSSQHAQEKPATATTSPTAYILSFNDSTVVAATCQTYGGKQPYQEEVVVGSGGACLPSKEVSEKHYIEPKPNPTTRKGRSSAETLDHIMTERKRRRELTERFIALSATIPGLKKIDKATILCEAITYVKRLKERVRELEEQCKRTRVESVSFVHQRSNIASDKGTTSRAMKSDECYKTSEALPTVEARVFKKDLLIRIHCKIQNGILIKILDHLNTLDLYTTSNSVMPFGSSTLDISIVAQIGDKFNATMNDLVKNLRLVLLQSSEAQQ 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00092 359 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 221 IPR011598 GO:0046983
Phco1g00092 359 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 176 245 IPR036638 GO:0046983
Phco1g00092 359 Coils Coil 218 238 - -
Phco1g00092 359 PANTHER BHLH TRANSCRIPTION FACTOR 43 353 - -
Phco1g00092 359 Gene3D - 164 238 IPR036638 GO:0046983
Phco1g00092 359 SMART finulus 178 227 IPR011598 GO:0046983
Phco1g00092 359 Pfam Helix-loop-helix DNA-binding domain 177 221 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00092 Phco-Chr1 663491 665365 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco1g00092 HLH 2e-07 No_clan