Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00079 ATGGCCAGACCCCAACAACGCTATCGTGGAGTCCGCCAAAGGCACTGGGGCTCTTGGGTCTCAGAAATTCGCCACCCTTTATTGAAGACTAGAATTTGGCTTGGAACCTTTGAAACGGCTGAAGATGCAGCAAGAGCATATGATGAAGCAGCAAGGCTCATGTGTGGTCCAAAAGCACGCACCAATTTCCCATACAACCCCAATGAACCACACTCATCCTCATCCAAGCTTCTCTCTGCCACTTTAACGGCTAAGTTACACAAGTGTCACATGGCCTCGCTTTCTCTTCAAATGGCCAAGCAAAAACCACCACAGAACAACAAAGAGCCTCAACCCTCACAAGGGTCCAATCCATTTTCCTCTGCCAACATAATCGCTGGATCAAGCGCTGACACTGGTTTTAGATGGCCAGAGAACAGACACGAGGAGTTAAGGTGGCTTGAAGGGAATTGGGTTAGCGTGGGAGGCCAAGTTGAAGTTTCACATCAACAATTCCAGCCAGTTCTTGAAGATGATCACATAGAGCAGATGATTCAGGAGTTGCTTGATTATGGATCAATTGAGCTTTGCTCTGTTGGCTCAACCTAG 588 0.4779 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYNPNEPHSSSSKLLSATLTAKLHKCHMASLSLQMAKQKPPQNNKEPQPSQGSNPFSSANIIAGSSADTGFRWPENRHEELRWLEGNWVSVGGQVEVSHQQFQPVLEDDHIEQMIQELLDYGSIELCSVGST 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00079 195 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Phco1g00079 195 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Phco1g00079 195 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Phco1g00079 195 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Phco1g00079 195 MobiDBLite consensus disorder prediction 98 124 - -
Phco1g00079 195 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 120 - -
Phco1g00079 195 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Phco1g00079 195 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Phco1g00079 195 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Phco1g00079 195 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Phco1g00079 195 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00079 Phco-Chr1 574302 575064 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco1g00079 AP2 8.4e-12 CL0081