Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00073 ATGGATCTTCAAAGGCAAGAACCATGCCCTTCTGAAAGCTTGAACATCATCACATTTTCAGACACTATGCCATGCCAAAAATCTTCCAGAGACACTCAAAAAAAGAGGAATCACACAGAAAGTGATGATCAAAAACACCCACATGACTCAATTCCTCGAGTTTTACTAGATCTAAGTCTCTCCAACAAGGATTCAGGTGATGATGACTCAAAGCCAGAACTCAACCTCCTCAATTGTTTCCATACGAATTTCTCTGAAAATTCATCAGAGTCTAGTCAGGGAAATGAACTGGATCCCCGGGTCTTCTCATGCAACTACTGCCAAAGAAAGTTTTATAGTTCTCAGGCACTTGGGGGACACCAGAATGCACACAAACGTGAAAGAACTTTAGCAAGAAGAGGATACAAAGCAGGTGCAGCAGATTTTGGACACACGTACTCCAGCATGCCTTTTCTTCCTTCTCATGGCTTATACAACAAATCACTTGGAATTCAGGTTCATGCCATGATTAACAAACCTTCTCATCAAACACCCTTTTTCGGGTTGTGCCGTTCCAATGGGTGGCAGAGGCAGCCTTTGGATTCGCAACCAGCAATTGGAAATTTTCGTGTGGGGGCAGAAACTGAGTCATCCTTGGCTGATAGTGTTCCAAAGTTAGGCAAGTTTTCCACAAGGCTGGTGACAGAGGGATTTGGAGGTTACTGCTTTGGTAGCATTACTCATTTGAAGTCTAAACAAGAGAAATTGCAGAAGCTTGACTTGTCCCTTAAGCTCTAA 777 0.4299 MDLQRQEPCPSESLNIITFSDTMPCQKSSRDTQKKRNHTESDDQKHPHDSIPRVLLDLSLSNKDSGDDDSKPELNLLNCFHTNFSENSSESSQGNELDPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLARRGYKAGAADFGHTYSSMPFLPSHGLYNKSLGIQVHAMINKPSHQTPFFGLCRSNGWQRQPLDSQPAIGNFRVGAETESSLADSVPKLGKFSTRLVTEGFGGYCFGSITHLKSKQEKLQKLDLSLKL 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00073 258 MobiDBLite consensus disorder prediction 1 53 - -
Phco1g00073 258 Gene3D Classic Zinc Finger 80 141 - -
Phco1g00073 258 MobiDBLite consensus disorder prediction 28 52 - -
Phco1g00073 258 FunFam Zinc finger protein 2 80 148 - -
Phco1g00073 258 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 129 IPR013087 -
Phco1g00073 258 SUPERFAMILY beta-beta-alpha zinc fingers 99 129 IPR036236 -
Phco1g00073 258 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
Phco1g00073 258 MobiDBLite consensus disorder prediction 8 27 - -
Phco1g00073 258 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 1 258 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00073 Phco-Chr1 539572 540348 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco1g00073 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00073 1 539572 540348 Phco1g00073 1 539572 540348 ECH