Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00064 ATGGATCCGCAAAACGAACACGTCCAAGGTAACCCCAGAAACATAATCTTCAACAAATACGAGATGGGGCGGGTGCTCGGGCAGGGGAACTTCGCCAAGGTATACCACGGCAGAAACCTCATCACCAACGACAACGTGGCGATGAAGGTCATAAAGAAAGAGAAGCTGAAGAAGGAGCGACTTGTGAAGCAGATCAAACGCGAGGTCTCGGTGATGAAACTGGTGCGGCATCCCCACATCGTCGAACTGAAGGAAGTGATGGCCACCAAGGGAAAAATCTTCCTCGTCATGGAATACGTTAGGGGCGGGGAACTCTTCACCAAAGTCAACAAAGGAAAACTCTCCGAAGACCTCGCCAGAAAGTACTTCCAACAACTCATCAGCGCCGTCGACCACTGCCACAGCCGCGGCGTCACCCACCGCGATCTCAAGCCGGAGAATCTCCTTTTGGACCAGAACGAGGACCTCAAAGTCTCCGACTTCGGACTCTCCGCGCTGCCGGAGCAGCGCCGGGCCGACGGCATGCTCGTAACCCCGTGTGGAACCCCTGCTTACGTGGCACCGGAGGTTCTGAAGAAAAAGGGTTACGACGGTTCAAAGGCTGATATATGGTCGTGTGGGGTGATTCTCTACGCCTTGCTCTGCGGCTATTTACCCTTCCAAGGTGAGAACGTTATAAGAATTTATCGAAAAGCGTTTAGAGCTGAATATGAATTACCCGAATGGGTTTCGCCGCAGGCCAAAAATCTCATTTCGAATCTCCTCGTTGCTGATCCTTCCAAGAGGTATTCCATTCCCGATATAATGAACGACCCTTGGTTTCAATTTGGGTTCATGAGGCCCATTGCGTTTTCAATTAAGGACTCCGAGGTAGAACACAACTTCGATTTCGACGACGTCGTGGGGACCAACGACGATGAGGTTCCAATGAGGAAACCCACGAGGCCGTTTTACAACGCGTTTGAGATAATCTCATCCTTGTCGCACGGGTTTGATCTTAGGAGTTTGTTTGAGACGAGGAAGCGGTCGCCCTCGATGTTTATCTGTAAATTTTCGGCTTCAGCGGTGATGGCGAAGGTGGAGGCTGCTGCGAAGATGCTGAATTTTAGGGTGACGGGGAAGAAGGAATTTGCGGTGAGGATGCAGGGGGCGGAGGAGGGGAGAAAGGGGAAGTTGTCGATGACGGTGGAGGTTTTTGAGGTGGCGCCGGAGGTGGCGGTGGTGGAGTTTTCTAAGTCTGCCGGAGACACTTTGGAGTATATTAATTTGTGTGAGGAGCAAATGCGACCATCTCTGAAAGACGTTGTATGGAGCTGGCAGGGTGATAGCAATCACTTCTCCAACAATTAG 1350 0.5156 MDPQNEHVQGNPRNIIFNKYEMGRVLGQGNFAKVYHGRNLITNDNVAMKVIKKEKLKKERLVKQIKREVSVMKLVRHPHIVELKEVMATKGKIFLVMEYVRGGELFTKVNKGKLSEDLARKYFQQLISAVDHCHSRGVTHRDLKPENLLLDQNEDLKVSDFGLSALPEQRRADGMLVTPCGTPAYVAPEVLKKKGYDGSKADIWSCGVILYALLCGYLPFQGENVIRIYRKAFRAEYELPEWVSPQAKNLISNLLVADPSKRYSIPDIMNDPWFQFGFMRPIAFSIKDSEVEHNFDFDDVVGTNDDEVPMRKPTRPFYNAFEIISSLSHGFDLRSLFETRKRSPSMFICKFSASAVMAKVEAAAKMLNFRVTGKKEFAVRMQGAEEGRKGKLSMTVEVFEVAPEVAVVEFSKSAGDTLEYINLCEEQMRPSLKDVVWSWQGDSNHFSNN 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00064 449 Coils Coil 48 68 - -
Phco1g00064 449 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Phco1g00064 449 ProSiteProfiles Protein kinase domain profile. 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g00064 449 Pfam NAF domain 317 372 IPR004041 GO:0007165
Phco1g00064 449 SMART serkin_6 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g00064 449 FunFam Non-specific serine/threonine protein kinase 12 99 - -
Phco1g00064 449 SUPERFAMILY Protein kinase-like (PK-like) 16 329 IPR011009 -
Phco1g00064 449 Pfam Protein kinase domain 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g00064 449 Gene3D Kinase associated domain 1, KA1 315 438 - -
Phco1g00064 449 FunFam Non-specific serine/threonine protein kinase 13 312 - -
Phco1g00064 449 ProSitePatterns Protein kinases ATP-binding region signature. 26 53 IPR017441 GO:0005524
Phco1g00064 449 CDD CIPK_C 319 433 - -
Phco1g00064 449 ProSiteProfiles NAF domain profile. 313 338 IPR018451 GO:0007165
Phco1g00064 449 FunFam Non-specific serine/threonine protein kinase 314 437 - -
Phco1g00064 449 Gene3D Transferase(Phosphotransferase) domain 1 12 314 - -
Phco1g00064 449 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 8 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00064 Phco-Chr1 473311 474660 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Phco1g00064 Pkinase 3.6e-77 CL0016