Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00060 ATGGATTGTTCATCATGGATTAACACTTCCTTGGATCTCAACATTAATCCACGCAGAGTTCATGAAGATGTTCCCAAGGAGGTAGAAAGCAAGCTTTTCTCGTTGGGAATGCCCAAGTTTAACGTGGAAGAAGAGTGTACTAATGACTTGGAGGAGGAACTGAAGCGGGTGACAGCAGAAAACAAGAAGTTGGGTGAAATGCTCTCGGTGGTGTGTGAGAACTACAACACTTTGCGAAGCCATTTGATGGAATATACGAGGAAAAATGGTGAAAAAGAGACCAGCCCAACATCAAAGAAAAGGAAGTCTGAAAGCAGCAACATCAATAGTATTTGTGTTATGGGGACTAACAATGGAAACTCCGAGAGCAGCTCCACTGATGAAGAATCTTGCAAGAAACCGAGGGAAGAAACCATCAAACCAAAAATTTCGAGAGTTTATGTCAGGACCGAAGCATCTGACACTACCCTTATTGTGAAAGATGGATACCAGTGGAGGAAATATGGGCAAAAGGTGACCAGAGATAACCCTTGTCCAAGAGCATATTTCAAATGCTCTTTTGCTCCAAGCTGTCCTGTCAAAAAGAAGGTGCAAAGAAGTGTAGATGATCAATCTGTTCTGGTGGCTACTTATGAAGGAGAGCACAATCATCCCCAAGCTTCTTCCCAAATGGAGGCAACATCAGGTTCTGGCCGTAGTGTGGCCCTTGCTTCAGTGCCTTGTTCCGCATCACTCAGCACTGCCACTCCAACACTTGTTACCCTTGACTTGACTAAATCTAAGGGTAGCAACAACGATTCCAAGAACACAAGAACTAAAGTGGATTCACCTAAAGTAAAGCAGGTTTTGGTGGAACAGATGGCAACTTCTTTGACCACGGATCCTAATTTCAGAGCAGCACTTGTTGCTGCCATCTCAGGAAGATTGTTGCACAATTATTAA 942 0.4363 MDCSSWINTSLDLNINPRRVHEDVPKEVESKLFSLGMPKFNVEEECTNDLEEELKRVTAENKKLGEMLSVVCENYNTLRSHLMEYTRKNGEKETSPTSKKRKSESSNINSICVMGTNNGNSESSSTDEESCKKPREETIKPKISRVYVRTEASDTTLIVKDGYQWRKYGQKVTRDNPCPRAYFKCSFAPSCPVKKKVQRSVDDQSVLVATYEGEHNHPQASSQMEATSGSGRSVALASVPCSASLSTATPTLVTLDLTKSKGSNNDSKNTRTKVDSPKVKQVLVEQMATSLTTDPNFRAALVAAISGRLLHNY 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00060 313 MobiDBLite consensus disorder prediction 85 100 - -
Phco1g00060 313 ProSiteProfiles WRKY domain profile. 154 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco1g00060 313 MobiDBLite consensus disorder prediction 85 136 - -
Phco1g00060 313 Coils Coil 47 67 - -
Phco1g00060 313 Gene3D WRKY domain 143 220 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco1g00060 313 Pfam WRKY DNA -binding domain 160 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco1g00060 313 MobiDBLite consensus disorder prediction 101 125 - -
Phco1g00060 313 SUPERFAMILY WRKY DNA-binding domain 155 219 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco1g00060 313 SMART WRKY_cls 159 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco1g00060 313 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 39 309 IPR044810 GO:0003700
Phco1g00060 313 FunFam WRKY transcription factor 40 144 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00060 Phco-Chr1 453292 454968 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Phco1g00060 WRKY 3.7e-23 CL0274