Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00053 ATGAACGAAAATGAAGTGAAGAAACATAGGATTCGTATTTGGTACTCCTGGCGGTCTCTATGTAATTTCTTCAAAATGTTTGACTCTGGTTACAAGTCACAGTATATTGGAGGCCAGAAGGAGAAGTTCGTAAGGTTGGATGATCTGGATTCGAATTTGTCGATGCCATCAAGCTCAAGTGGGATGAAAAAATTAAGATTCAGTTTAGATTCTCTGCCACTTCCTGGTCGTGGAAGAAAAAAAGCATCGAAATCGTTTAGGCAAGGAGTGAAGAAGAGTTCGGATGGACTAAAAACATTTGGAAGATCACTGAAGACTGGGGTGACTACATGGGCAGTGTTCCCTGAAGACCTTAAAGTTTCAGAGAAAAAAGTATTTGACCCTCAAGACAAGACCCTTCTGTACTGGAACAAGTTTTTTGAGATTCTATGCATTTTTTCTGTGGCTTGTGATCCCTTCTTCTTTTATCTTCCTTATTTCAACCACAAATCATTTTGCCTCGCCATAGATAATGAGCTAGCAAGTTTTGCTGTCACACTGAGAACAATATGCGATGCCATTTATCTCATCCGCATAAGTTTTCAGTTCCGAACTGCTTACATTGCGCCTTCATCTCGGGTATTTGGACGAGGTGAACTTGTCATAGATCCTACCAAGATTGCCAAGAGATATTTACGACGTTACTTCATCATTGACTTCATTTCTGTGCTCCCTATACCACAGATTGTAGTGTGGAAATATCTTTACAGATCAGGACGTGTAGAGGTATTGGAAACAAAAACGTTACTGTTGAGAATTGTGATCCTGCAATATTTTCCAAGATTTATACGTTTTCTACCTTTAGCTTCAGAAGTTAAAAAGACAGCTGGTGTTTTTTCTGAGAACGCATTGCTCGGGGCCATGTACTATTTGATCTGGTATATGCTTGCTAGTCATATAACTGGCTCTTGCTGGTACTTACTAGCCATTGAACGTAATGACACCTGCTGGAAGAATGCTTGTGAAGAAGTTGAAGGGTGCAATAAACATTTCTTGTACTGTGCGAATTCGAACAAGCATATGCCAGGGTATGACAGTTGGAGAAATGTCAGCGAAGGTGTTCTGAAAAGTCGTTGCTATGTGGAGGATGGTTCCTCAGAATTTAGCTATGGAATCTTTTCTCAAGCTATAGAGTCTGGTATTGTAGCTTCCATAGAAGTTTTTCCTAAATTCTGTTACTGTTTATGGTGGGGCCTTCAAAACTTGAGTACACTTGGTCAGGGGCTTCTAACCAGTACATACCCTGGAGAGGTTATGTTTTCCATAGTAATAGCTATTATGGGGCTTATCCTTTTTGCTCTTCTGATTGGAAACATGCAGACGTACCTTCAATCAATGTCAGTTCGTCTTGAGGAAATGAGGATCAAAAGACGTGACTCTGAGCAATGGATGCATCATCGTTTACTTCCTCCAGAGCTAAGGGAAAGAGTGAGACGCTATGACCAATACAAGTGGCTGAACACCCGTGGAGTAGATGAAGAGAGCTTAGTTCAGAGTCTTCCAAAAGATCTCAGGAGAGATATCAAACGGCATCTTTGTTTGAATTTAGTCAGAAGGGTTCCTCTCTTTGCCAACATGGATGAACGTTTGCTTGATGCTATATGTGAGCGATTGAAGCCTAGTTTATATACAGAGGGAACTTACATAGTGAGGGAAGGGGACCCAGTTAATGAGATGCACTTCATCATACGTGGGCGTCTAGAGAGTGTCACCACAGATGGTGGAAGAAGTGGGTTTTTCAACAGAGGTCTTCTGAAGGAAGCCGACTTCTGTGGAGAAGAGCTACTAACGTGGGCATTGGACCCCAAATCTGCTGCTAACTTGCCATCATCAACAAGGACGGTGAAGGCTATGAATGAGGTGGAGGCATTTGCTTTGGAAGCAGAGGAGTTGAAGTTTGTTGCTTCCCAGTTTAGGCACATCCACAGTAGACAAGTTCAGCACACCTTCCGTTTCTATTCACAGCAGTGGAGAACATGGGCTGCTATCTACATTCAAGCAGCATGGAGGCGGCATTGCAGGAGAAAGATAGCAGAACAGCGCAGGAGGGAGGAAGAAGAATTATATGACTCTGATTATGACAACAGTGATGATTCTGCAAGAGCCTTGGTCAAGCGTTCTGAACCTGCTGCTTTTTCCTCATCTACCCTTGGACTTGGTACAACCGTCTATGCATCTCGCTTTGCAGCAAATGCACTTCGTGCTCACAGGCTTCGTGGTTCAAGTTCCAAGGACATGATCAAACTCCAAAAGCCCCCAGAACCTGACTTCAGTGATTTTGGTGAAAACTGA 2331 0.4269 MNENEVKKHRIRIWYSWRSLCNFFKMFDSGYKSQYIGGQKEKFVRLDDLDSNLSMPSSSSGMKKLRFSLDSLPLPGRGRKKASKSFRQGVKKSSDGLKTFGRSLKTGVTTWAVFPEDLKVSEKKVFDPQDKTLLYWNKFFEILCIFSVACDPFFFYLPYFNHKSFCLAIDNELASFAVTLRTICDAIYLIRISFQFRTAYIAPSSRVFGRGELVIDPTKIAKRYLRRYFIIDFISVLPIPQIVVWKYLYRSGRVEVLETKTLLLRIVILQYFPRFIRFLPLASEVKKTAGVFSENALLGAMYYLIWYMLASHITGSCWYLLAIERNDTCWKNACEEVEGCNKHFLYCANSNKHMPGYDSWRNVSEGVLKSRCYVEDGSSEFSYGIFSQAIESGIVASIEVFPKFCYCLWWGLQNLSTLGQGLLTSTYPGEVMFSIVIAIMGLILFALLIGNMQTYLQSMSVRLEEMRIKRRDSEQWMHHRLLPPELRERVRRYDQYKWLNTRGVDEESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTEGTYIVREGDPVNEMHFIIRGRLESVTTDGGRSGFFNRGLLKEADFCGEELLTWALDPKSAANLPSSTRTVKAMNEVEAFALEAEELKFVASQFRHIHSRQVQHTFRFYSQQWRTWAAIYIQAAWRRHCRRKIAEQRRREEEELYDSDYDNSDDSARALVKRSEPAAFSSSTLGLGTTVYASRFAANALRAHRLRGSSSKDMIKLQKPPEPDFSDFGEN 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00053 776 Pfam Ion transport protein 135 462 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Phco1g00053 776 FunFam Cyclic nucleotide-gated ion channel 1 533 651 - -
Phco1g00053 776 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 117 770 - -
Phco1g00053 776 SUPERFAMILY cAMP-binding domain-like 465 655 IPR018490 -
Phco1g00053 776 ProSiteProfiles IQ motif profile. 671 700 IPR000048 GO:0005515
Phco1g00053 776 CDD CAP_ED 535 666 IPR000595 -
Phco1g00053 776 Gene3D Helix hairpin bin 462 526 - -
Phco1g00053 776 MobiDBLite consensus disorder prediction 74 93 - -
Phco1g00053 776 Pfam Cyclic nucleotide-binding domain 556 645 IPR000595 -
Phco1g00053 776 Gene3D Jelly Rolls 533 653 IPR014710 -
Phco1g00053 776 ProSiteProfiles cAMP/cGMP binding motif profile. 535 618 IPR000595 -
Phco1g00053 776 MobiDBLite consensus disorder prediction 755 776 - -
Phco1g00053 776 SMART cnmp_10 535 666 IPR000595 -
Phco1g00053 776 FunFam Cyclic nucleotide-gated ion channel 1 462 526 - -
Phco1g00053 776 SUPERFAMILY Voltage-gated potassium channels 127 457 - -
Phco1g00053 776 Gene3D - 137 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00053 Phco-Chr1 407029 412441 Dispersed/Wgd