Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00041 ATGAGTGGAGGAGAAAAATGGAAGGAAGAGATGAAAATAGAGAAGGAGAACAGAGGGAAATTGAAGTTGACAGATGTGCGTAGAGTAGAGCGTGGAATTGCAGTTGTTGCGTGTTGCGAATGGGAGTGGATTGGTTTGGTACCTGTGCATTTACTTTATGAAATAAGTTTTAAAGGTTGTTTTAAAAATGAATTGTTTGTGAAGGGAAAGCAAAAAGCTTTTCTTCTATGGTGCAGAGGAAGTAAAGCGAACAAATCAAATCAACTGCATCAAAATTTCCTTTGCCTTCTCAAAATTTTCTCTCTCAAACTTCCTCGAACCTTCTCATATCAACTTCCTTTCCCTTTTCTTATTAATAATATATTATTCTTCTTAACACAAATATTTATTATATATTCTTTTTTCACGCTGGATTCCAGACATGAGATGAGGCCGATGCAACTCCCACCGCCTTCTGCCTCCGCCTCCGGCTCCGCTCCGGGACCTACCAACAACAAGGATCACCGTCCCCAGCGCCGCCGCAAGGACCTCACGCTGCCGCTGCCGCAGCGTGACACCAATTTGGCGGTGCCGCTTCCTCTTCCACCATCCACGGCCCCGGCCCCGGCCAGCGGCGGAGCCAGCCAGCAGCAGCAGCAGCAGGTCATCCCTTTCGCGGAGCTTGAGAGAATGAACCGCATCGGGAGCGGGAGCGGGGGGACGGTTTACAAGGTGGTCCACCGAACGACCGGGCGCGTTTACGCGCTGAAGGTGATATACGGGCACCACGAGGAGTCCGTGCGGCGGCAGATCCACCGGGAAATCCAGATCCTGCGCGACGTGGACGATCCAAACGTGGTGAAGTGTCACGAGATGTACGATCAGAACAGCGAAATCCAGGTGCTTCTGGAGTTCATGGACGGGGGATCTCTGGAGGGGAAACACATCCCGCAGGAGCAGCAGCTGGCAGATCTGTCGAGGCAGATTCTCCGGGGGTTGGCGTATCTGCACCGGCGGCACATCGTGCACAGGGACATCAAGCCCTCTAATCTGCTGATAAACTCGCGCAAGCAGGTGAAGATTGCGGACTTCGGTGTGGGTCGGATTCTGAACCAGACCATGGATCCGTGCAATTCGTCGGTGGGAACGATCGCCTACATGAGTCCGGAGAGGATCAACACGGACATAAACGACGGGCAATACGACGCGTACGCCGGGGACATATGGAGCTTTGGGGTGAGCATATTGGAGTTCTACATGGGCAGGTTTCCCTTCGCTGTTGGGAGGCAAGGCGATTGGGCCAGCCTCATGTGTGCCATCTGTATGTCTCAGCCACCAGAGGCTCCTCCTTCTGCCTCCCTCCACTTCAGGGATTTCATCTCCCGATGCCTCCAGCGCGATCCCTCTCGCCGCTTGTCTGCCTCAAGGTTGCTCGAACACCCCTTCATTGCTCCTCCCCACTCCAACCACAATCAGCTTCCTCCCAATCTCCACCAGCTCCTCCCCCCTCCTCCTCCCCGCCCACTTCCCTCCTAG 1515 0.5373 MSGGEKWKEEMKIEKENRGKLKLTDVRRVERGIAVVACCEWEWIGLVPVHLLYEISFKGCFKNELFVKGKQKAFLLWCRGSKANKSNQLHQNFLCLLKIFSLKLPRTFSYQLPFPFLINNILFFLTQIFIIYSFFTLDSRHEMRPMQLPPPSASASGSAPGPTNNKDHRPQRRRKDLTLPLPQRDTNLAVPLPLPPSTAPAPASGGASQQQQQQVIPFAELERMNRIGSGSGGTVYKVVHRTTGRVYALKVIYGHHEESVRRQIHREIQILRDVDDPNVVKCHEMYDQNSEIQVLLEFMDGGSLEGKHIPQEQQLADLSRQILRGLAYLHRRHIVHRDIKPSNLLINSRKQVKIADFGVGRILNQTMDPCNSSVGTIAYMSPERINTDINDGQYDAYAGDIWSFGVSILEFYMGRFPFAVGRQGDWASLMCAICMSQPPEAPPSASLHFRDFISRCLQRDPSRRLSASRLLEHPFIAPPHSNHNQLPPNLHQLLPPPPPRPLPS 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00041 504 SMART serkin_6 221 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g00041 504 Gene3D Transferase(Phosphotransferase) domain 1 305 492 - -
Phco1g00041 504 Pfam Protein kinase domain 222 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g00041 504 FunFam Mitogen-activated protein kinase 2 301 487 - -
Phco1g00041 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 334 346 IPR008271 GO:0004672|GO:0006468
Phco1g00041 504 ProSitePatterns Protein kinases ATP-binding region signature. 227 250 IPR017441 GO:0005524
Phco1g00041 504 MobiDBLite consensus disorder prediction 166 180 - -
Phco1g00041 504 FunFam Mitogen-activated protein kinase 2 202 300 - -
Phco1g00041 504 MobiDBLite consensus disorder prediction 145 213 - -
Phco1g00041 504 Gene3D Phosphorylase Kinase; domain 1 202 300 - -
Phco1g00041 504 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 172 478 - -
Phco1g00041 504 CDD PKc_MAPKK_plant_like 219 476 - -
Phco1g00041 504 SUPERFAMILY Protein kinase-like (PK-like) 221 497 IPR011009 -
Phco1g00041 504 ProSiteProfiles Protein kinase domain profile. 221 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g00041 504 MobiDBLite consensus disorder prediction 151 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00041 Phco-Chr1 357887 359594 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Phco1g00041 Pkinase 5.6e-65 CL0016