Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00020 ATGTGGCTTCCAAGTACAAAGGAATCAGTAATTAAAAAGGGAGGAAGAGGAAATGGATTGGTGGCAGTTGCTGTAGAAAAGGATAACAAAGGCAGCAGACAGGCTCTCAAATGGGCTGCTGATACGCTTCTTTCAAGAGGCGAAACTCTTATTCTGATCCACGTCTTGCACACAACCTCCTCATCTCTTCCAAGAGGCAGCCATGCCAAACTAAGCAACACCAACCGCCCAGCTGCATCTCCCCAGAGAGACAAACTTGTCAACCTTACAAAGGATCTATTTGAGACTTTTCATTGTTATTGTTCACGCAAAGATATACATTGTCTTGATATCGTTCTGGAAGACATGGATGTGGTGAAAGGAATAATTGAATATGTCTCTTATGCTGCAATTGAGAACTTGGTGCTTGGTGCAGCCTCCCGGCATGGCTTTATTAGGTTCAAGAAAAGTACACCAAGCATCATATTAAAGGGGGTACCGGATTTCTGCAGTGTGTATGTCATTTCTAAGGGGAGAATCTCTTCAGTTAGGAGCGCTTCTCGAAGGGCCCCACATGCCTCCCCACTGCTGAGGCAAATAGAGACTATAAATGATGAGAATGAAAGTGAATCTCGTATATCCTGTAGTAGGTTGAGCTTCAAAGCAGGCAACAGGGCACTCAAACCGTCCAGCTGGCAGGGTGAATCCATGAACAAGACACAATTTGGCAGAAGAATAGGGCTGAGTGGAAGGTTATCCACGGGGTTCAACGAACCTGAATCTGACATATCATTTGTAAGCTCTGACAGGCCCAGCAGTGTGCGTTCATCCTCTGTTTTCTACGACCAAGTGGAGGGTGCCGGAAATGGGCGAACTTCAACCAGTTCAGATCGTAGCTTGGGGCCAACATGCATGAAACACAAGTTCACCGACTACAGTTCACCTGACCATTTATTTTCAGAGGAAAACAGCCGCTCATCGTTTTCTAGTTTACAAAACATTGACGAAGTGGAAGCTGATATGAGGAAGTTGAGTTTGGAGTTAAAGCAAACAATGGAAATGTACAGCACTGCATGCAAAGAAGCCCTGACAGCGCACCAGAAGTTAGTGGAACTGAACAACGGGGAAATAGAGAATGGAAAGAAGCTAGAGGAGGCAAGGCTGTCGCAGGAAGCAGCGGAGGCAATGGCAGAGAAAGAGAAAGAAAGAAGTAAAGCAGCGAAGGAAACAGCAGAAGCGGCAAAGAGAATAGCAAGGGTGGAAACAAAGAAAAGAGCAGACGTGGAAGTGAAATGTCTGAAAGAAGCAGAGGAAAGGAGGAAATTGTTGGAAAATCTAACACGGACAGATAAAAGATACAGGAAATACACAATGGAAGAGATTCAGAAGGCAACAAACGAGTTCTCGGAATCCCAGAAAATAGGGGAAGGAGGTTATGGACCGGTGTACAAGTGTTACCTGGATCACACAGCAGTGGCAGTGAAGGTTCTGCGCCCAGGTTCAGCACAGGGGAAGACACAGTTTGAGCAAGAGGTGAACATACTAGGGTACATAAGACATCCCAACATGGTGCTTCTGGTGGGAGCATGTCCAGAGGAGGGAGTGCTGATATACGAATACATGGAGAATGGAAGCTTGGAAGACTGCCTGTTTGGAAAGAAAAAGGAGGAGGAGAAGGAGGGGATAAGCAGTTGGGAGGTCAGGTTCGGAATAGCGGCGGAGATAGCCACGGGCCTACTGTTCCTGCATCAGACAAAGCCAGAACCGCTGGTGCACCGAGACCTGAAGCCCGGTAATATATTGCTGGACCACAACTATGTGAGCAAGATAAGCGATGTGGGACTGGCTAGGCTTCTGCCTGCGGCAGTGGCGGAGAACGAAACGCAGTGCCGCGTGACTGCCGCAGCAGGAACCTTCTGCTACATCGATCCGGAGTACCAGCAGACCGGAATCCTGGGCGTGAAGTCGGATGTGTATTCTCTGGGAATAATTATTCTCCAGCTATTGACCGGAAGGCCCGCCATGGGCTTGGCTCACCAGGTCCAACACGCCATCCAGAAGGAAACCTTTGCCCAGATTCTGGACCCATCCGTCCCGGACTGGCCCCTCCCACAGGCCCTCTCCCTTGCCAACTTGGCACTCCATTGCGCACAGCTCAGACGGAAGGACCGCCCTGACCTTGCCACCTTCATCCTCCCTCAGCTCCAAATGCTCAGAGAATTTGGCCGCCGCCACCACCACCTTCCGCAACCTGCCCAGGATGAGGACGTCCTCAGCGAACCCACTTCTCAACATTCTGGAACCCCCTCAACCCCCACAACCGACCAACCCATACAAGAGAAGAATGGCGAACGTGAAATAGAAATAGTGAAGAGGAAGAAGAGGTTCCGCTCGGTGGCTGTCACAGCAATTGCGACCGATTCTTCACCACAGACAATCCTCTGA 2424 0.4934 MWLPSTKESVIKKGGRGNGLVAVAVEKDNKGSRQALKWAADTLLSRGETLILIHVLHTTSSSLPRGSHAKLSNTNRPAASPQRDKLVNLTKDLFETFHCYCSRKDIHCLDIVLEDMDVVKGIIEYVSYAAIENLVLGAASRHGFIRFKKSTPSIILKGVPDFCSVYVISKGRISSVRSASRRAPHASPLLRQIETINDENESESRISCSRLSFKAGNRALKPSSWQGESMNKTQFGRRIGLSGRLSTGFNEPESDISFVSSDRPSSVRSSSVFYDQVEGAGNGRTSTSSDRSLGPTCMKHKFTDYSSPDHLFSEENSRSSFSSLQNIDEVEADMRKLSLELKQTMEMYSTACKEALTAHQKLVELNNGEIENGKKLEEARLSQEAAEAMAEKEKERSKAAKETAEAAKRIARVETKKRADVEVKCLKEAEERRKLLENLTRTDKRYRKYTMEEIQKATNEFSESQKIGEGGYGPVYKCYLDHTAVAVKVLRPGSAQGKTQFEQEVNILGYIRHPNMVLLVGACPEEGVLIYEYMENGSLEDCLFGKKKEEEKEGISSWEVRFGIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDHNYVSKISDVGLARLLPAAVAENETQCRVTAAAGTFCYIDPEYQQTGILGVKSDVYSLGIIILQLLTGRPAMGLAHQVQHAIQKETFAQILDPSVPDWPLPQALSLANLALHCAQLRRKDRPDLATFILPQLQMLREFGRRHHHLPQPAQDEDVLSEPTSQHSGTPSTPTTDQPIQEKNGEREIEIVKRKKRFRSVAVTAIATDSSPQTIL 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00020 807 Gene3D Transferase(Phosphotransferase) domain 1 534 745 - -
Phco1g00020 807 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 29 167 - -
Phco1g00020 807 Coils Coil 327 347 - -
Phco1g00020 807 MobiDBLite consensus disorder prediction 62 81 - -
Phco1g00020 807 Pfam Protein kinase domain 462 719 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g00020 807 Gene3D - 21 206 - -
Phco1g00020 807 Gene3D Phosphorylase Kinase; domain 1 440 533 - -
Phco1g00020 807 Coils Coil 376 410 - -
Phco1g00020 807 Pfam Universal stress protein family 22 147 IPR006016 -
Phco1g00020 807 ProSiteProfiles Protein kinase domain profile. 461 741 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g00020 807 SMART serkin_6 461 728 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g00020 807 CDD STK_N 20 171 - -
Phco1g00020 807 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 433 533 - -
Phco1g00020 807 ProSitePatterns Serine/Threonine protein kinases active-site signature. 583 595 IPR008271 GO:0004672|GO:0006468
Phco1g00020 807 MobiDBLite consensus disorder prediction 62 82 - -
Phco1g00020 807 SUPERFAMILY Protein kinase-like (PK-like) 444 721 IPR011009 -
Phco1g00020 807 PANTHER OS02G0152300 PROTEIN 21 758 - -
Phco1g00020 807 MobiDBLite consensus disorder prediction 749 771 - -
Phco1g00020 807 MobiDBLite consensus disorder prediction 742 779 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00020 Phco-Chr1 242326 249556 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Phco1g00020 Pkinase 3.4e-41 CL0016