Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00018 ATGCACCACAACCTTAACCTTGCAAGGTTGTGGCTTGCTTTGCTTGCGGTCTCAACCACCTCAGTTCATTGCAAAACCTCCTCCCAAGATGTCGCAGCCCTTAATGCGATGTATTCCAGCTTAAATTCCCCTTCAAAGCTGAGTGGCTGGAAATCAAGTGGAGGTGATCCTTGTGGTGAATCCTGGAAAGGAATCAAATGCTCAGGCTCTTCTGTCACAGAAATAAATTTGTCAGACATGGGACTGACTGGATCAACGGGCTACCAGTTGTCCAGCTTATCATCAGTGACCTACTTTGATTTGAGCAACAACAACCTCAAGGGTGATATACCGTATCAACTTCCTCCAAAAGCTCGTCATATAGATCTTTCGAACAATGGCTTCACGGGAAGTATACCTTTTTCCCTTTCTCAGATGGATGACCTCAACCAGCTAAATCTTGGACATAATCAGCTCCAAAACCAGTTGGGAGATATGTTTGAAAAGCTCACTAAACTCAAACAACTGGACGTATCATTCAATTCTCTATCAGGAAACCTACCGCAGAGTCTCAAATCGCTCAAAAACCTCAAGAAGTTGCACCTTCAAAACAACCAATTCACTGGTTCAATAAATGTTCTTGCCAACCTTCCACTTGAAGAGTTGCATGTCGAAAACAACAAATTTACTGGTTGGGTTCCCGAGGAGTTGAAGAATATAAATGAATTGCAAACTGGAGGAAACTCATGGTCAAAGGGACAAGCACCTCCTCCTCCTCCTGGTACTCCCCCTATCAACCATTCCAAGAAAAAGAAAGGAAAACCCGTTATTAGTGGAGTAGCTATAGCAGGCCTAATTTTTGGCGTACTGGCAGTAATTATAATTGTTCTTGCTGTTTGTAAAAGAAAGTCACCGAAACCTTCTTCACAATTTATGGATGAAGAGAGGCGTAGCCATCATACATCTCGTACACCCCTTGCATCTCAGGAGTTATCAAAAGATTCGGGTGCTAATGTCAAGAAAGAATTCAAAGGATTTAACTCATTGGATTCCACTTCAATTGACGTAAAGGCTTTGCAAAAATCTCCGTCAGTTGGTGTCAGGTCGTCTGCCTCCGATTGTGTGCAATCCTTTAATGACAATGAGTTTGCAAATCGTCTAAATTCTAGAAGAAGCGCATCAATCCGTGTTACTACTTTTTCGCTGGCAGAGCTGCACTCGGCTACTGCTAGTTTTGGTTCAGGTCGACTTCTTGGTGAAGGATCCATAGGAAGTGTTTATCGGGCTAAATATGCCGATGGAAAGGTATTGGCTGTAAAAAAAATCAACCCTTCACTTTTCCAAGGTGGTCACTCTGAGGAATTCTCGCAGATTGTTTCAAAACTCAGCAAACTTCACCACCCAAATATTGTTGAGCTTGTTGGTTATTGTTCAGAACAGGAGCACATGTTAATTTATGATTATTTTAGAAATGGCTCTCTCCATGGCTTTTTACACTTGTCAGATGACTTCAGCAAACCACTCACTTGGAACACAAGAATCAGAATTGCATTGGGAACAGCTCGGGCTATTGAGTACCTGCATGAAACTTGTTCTCCTCCTTTATTGCACAAGAATATTAAGTCCTCGAATATTTTGCTTGACACGGACCTGAATCCTCGTCTCTCAGACTATGGTTTGGCATCCTTCCACCAGCGTACTAGCCAAAATCTTGGGGCAGGATATAATGCACCAGAATGCACAAAACCTTCAGCCTTTACACAGAAGAGTGATGTATACAGTTTTGGGGTAGTGATGCTGGAACTTCTCACAGGTCGAATGGCTTTCGACAGTTCAAAGCCAAAAGCAGAACAATGTCTGGTTCGTTGGGCAACTCCACTTCTGCACGACATTAACGCCGTAGAGAAAATGGTGGACCCTGCCTTGCGGGGGCTGTACCCTCCTAAGTCACTCTTCCGATTTGCTGATATCATCGCTCTCTCTGTTCAGTCTGAACCTGAATTTCGGCCACCTGTGTCAGAGTTAGTTCAGGCTTTAATGCGATTGGTTCAACGTTCAAGTATGACACTGAGGGAGGATTTTGATTGA 2067 0.433 MHHNLNLARLWLALLAVSTTSVHCKTSSQDVAALNAMYSSLNSPSKLSGWKSSGGDPCGESWKGIKCSGSSVTEINLSDMGLTGSTGYQLSSLSSVTYFDLSNNNLKGDIPYQLPPKARHIDLSNNGFTGSIPFSLSQMDDLNQLNLGHNQLQNQLGDMFEKLTKLKQLDVSFNSLSGNLPQSLKSLKNLKKLHLQNNQFTGSINVLANLPLEELHVENNKFTGWVPEELKNINELQTGGNSWSKGQAPPPPPGTPPINHSKKKKGKPVISGVAIAGLIFGVLAVIIIVLAVCKRKSPKPSSQFMDEERRSHHTSRTPLASQELSKDSGANVKKEFKGFNSLDSTSIDVKALQKSPSVGVRSSASDCVQSFNDNEFANRLNSRRSASIRVTTFSLAELHSATASFGSGRLLGEGSIGSVYRAKYADGKVLAVKKINPSLFQGGHSEEFSQIVSKLSKLHHPNIVELVGYCSEQEHMLIYDYFRNGSLHGFLHLSDDFSKPLTWNTRIRIALGTARAIEYLHETCSPPLLHKNIKSSNILLDTDLNPRLSDYGLASFHQRTSQNLGAGYNAPECTKPSAFTQKSDVYSFGVVMLELLTGRMAFDSSKPKAEQCLVRWATPLLHDINAVEKMVDPALRGLYPPKSLFRFADIIALSVQSEPEFRPPVSELVQALMRLVQRSSMTLREDFD 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00018 688 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 27 254 - -
Phco1g00018 688 MobiDBLite consensus disorder prediction 300 316 - -
Phco1g00018 688 SUPERFAMILY L domain-like 25 237 - -
Phco1g00018 688 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 72 672 - -
Phco1g00018 688 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 482 686 - -
Phco1g00018 688 Gene3D Ribonuclease Inhibitor 24 258 IPR032675 -
Phco1g00018 688 Gene3D Transferase(Phosphotransferase) domain 1 482 687 - -
Phco1g00018 688 ProSiteProfiles Leucine-rich repeat profile. 189 211 IPR001611 GO:0005515
Phco1g00018 688 Pfam Leucine rich repeat 118 176 IPR001611 GO:0005515
Phco1g00018 688 MobiDBLite consensus disorder prediction 236 265 - -
Phco1g00018 688 Coils Coil 149 169 - -
Phco1g00018 688 Pfam Leucine rich repeat N-terminal domain 28 68 IPR013210 -
Phco1g00018 688 Pfam Protein tyrosine and serine/threonine kinase 408 672 IPR001245 GO:0004672|GO:0006468
Phco1g00018 688 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 370 481 - -
Phco1g00018 688 ProSiteProfiles Protein kinase domain profile. 405 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g00018 688 Gene3D Phosphorylase Kinase; domain 1 364 481 - -
Phco1g00018 688 MobiDBLite consensus disorder prediction 298 327 - -
Phco1g00018 688 SUPERFAMILY Protein kinase-like (PK-like) 384 672 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00018 Phco-Chr1 224880 230568 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Phco1g00018 PK_Tyr_Ser-Thr 1e-38 CL0016